Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq37 95.1 9e-15
seq26 95.1 9e-15
seq65 93.3 3e-14
seq365 86.0 4e-12
seq93 82.4 5e-11
seq23 82.4 5e-11
>seq37
Length=18181243
Score = 95.1 bits (104), Expect = 9e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021
|||| ||| | |||||||||||| || || || |||||||| || | | ||| |
Sbjct 5582820 CTTAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTTCGACCA 5582761
Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081
||||| | ||| ||||| || | ||||| | ||||| || ||||| ||||||||
Sbjct 5582760 TCTTCCAGTTGCTTGCCCGCAAAAATCAATCTTTGTTGATCAGGGGGAATACCTTCCTTA 5582701
Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141
|| || ||| || ||| |||| |||||||| ||| || || | ||||||
Sbjct 5582700 TCTTGTATCTTGGCCTTGACATTTTCAATAGTATCAGACAGTTCGACCTCAAGCGTAATG 5582641
Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||||| ||| || | ||||| |||||
Sbjct 5582640 GTCTTCCCTGTCAAAGTCTTCATGAAAATCTGCAT 5582606
>seq26
Length=21800395
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | || | ||| | |||||||||||| || || || |||||||| || |
Sbjct 5591668 CCACCACGAAGCCTCAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGTC 5591727
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | ||| | ||||| | ||| ||||| || | ||||| | ||||| || |||
Sbjct 5591728 AAAGTTCAACCATCTTCCAGTTGCTTGCCTGCAAAAATCAATCTTTGTTGATCAGGGGGA 5591787
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| |||||||| || || ||| || ||| |||| |||||||| | ||||||
Sbjct 5591788 ATACCTTCCTTATCTTGTATCTTGACCTTGACATTTTCAATAGTATCAGACTGTTCTACC 5591847
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | | ||||| || || |||| ||| || | ||||| |||||
Sbjct 5591848 TCAAGCATGATGGTCTTCCCCGTCAAAGTCTTCAAGAAAATCTGCAT 5591894
>seq65
Length=13810318
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || || || || || ||||| || |||||||| ||| | | ||| | ||||||
Sbjct 5575234 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGGAAGTTCGGCCATCTTCT 5575293
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| ||||| ||||| | ||| ||| ||||| || ||| || |||||||||||
Sbjct 5575294 AGCTGTTTTCCAGCAAAAATCGGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCCTGG 5575353
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|||||| ||| ||| | || |||||||| || ||| || || | || ||||| ||
Sbjct 5575354 ATTTTGGCTTTGACATTCTCGATAGTATCACTGGGTTCAACCTCAAGAGTGATGGTCTTG 5575413
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| ||||| || || ||||| || ||||
Sbjct 5575414 CTCGTCAGGGTCTTCACAAAGATCCGCAT 5575442
>seq365
Length=1348131
Score = 86.0 bits (94), Expect = 4e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 14977 AGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTG 15036
|| || || ||||| || |||||||| || |||| || | ||||||| ||||||
Sbjct 790449 AGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTTGGCCATCTTCTAGTTGTTTT 790390
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
| ||| | ||||||| |||| || ||| || ||||||||||| |||||| |
Sbjct 790389 CTAGCAAAAATCAAACATTGTTCATCTGGTGGGATACCTTCCTTGTCCTGGATTTTGGCT 790330
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| | || ||| |||| || ||| || || | || ||||| || || ||||
Sbjct 790329 TTGACATTCTCGATAATATCACTGGGTTCAACCTCAAGAGTGATGGTCTTGCCCATCAGG 790270
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||| || || ||
Sbjct 790269 GTCTTCACAAAGATCTGTAT 790250
>seq93
Length=11044861
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| | |||||||||||| || || || |||||||| || | ||||| | |||||
Sbjct 4041699 AACAAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAATTCGACCATCTTC 4041640
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||| ||||| | | ||||| ||||| || ||||| |||||||| ||
Sbjct 4041639 CAGTTGCTTGCCCACAAAAATCAATTTTTGTTGATCAGGGGGAATACCTTCCTTATCTTG 4041580
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|| ||| || ||| |||| |||||||| ||| || || | || || || |
Sbjct 4041579 TATCTTGGCCTTGACATTTTCAATAGTATCAGACGGTTCGACCTCAAGCGTGATAGTCTC 4041520
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||||||| ||| || |||||||| |||||
Sbjct 4041519 CCCTGTCAAAGTCTTCACAAAAATCTGCAT 4041490
>seq23
Length=22081990
Score = 82.4 bits (90), Expect = 5e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||||||||| || || || ||||| || || | | ||| | |||| |||||
Sbjct 21845118 TGAAGGGTAGACTCCTTCTGAATGTTATAGTCAGACAAAGTTCATCCATCTTTCAATTGC 21845177
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||| | || | ||||| | ||||| || ||||| |||| ||| || || |||
Sbjct 21845178 TTGTCCGCAAAAATCAATCTTTGTTGATCAGGGGGAATACCTTTCTTATCTTGTATCTTG 21845237
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| ||| |||| ||||||| | ||| || || | ||| ||||| || ||||||
Sbjct 21845238 GCCTTGACATTTTCAATAGTATTGGATGGTTCGACCTCAAGGGTGATGGTCTTCCCTGTC 21845297
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
| ||| || |||||||| |||||
Sbjct 21845298 AAAGTCTTCACAAAAATCTGCAT 21845320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357383698007210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |