Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq37 95.1 9e-15 seq26 95.1 9e-15 seq65 93.3 3e-14 seq365 86.0 4e-12 seq93 82.4 5e-11 seq23 82.4 5e-11 >seq37 Length=18181243 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 |||| ||| | |||||||||||| || || || |||||||| || | | ||| | Sbjct 5582820 CTTAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTTCGACCA 5582761 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | ||| ||||| || | ||||| | ||||| || ||||| |||||||| Sbjct 5582760 TCTTCCAGTTGCTTGCCCGCAAAAATCAATCTTTGTTGATCAGGGGGAATACCTTCCTTA 5582701 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || || ||| || ||| |||| |||||||| ||| || || | |||||| Sbjct 5582700 TCTTGTATCTTGGCCTTGACATTTTCAATAGTATCAGACAGTTCGACCTCAAGCGTAATG 5582641 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||||| ||| || | ||||| ||||| Sbjct 5582640 GTCTTCCCTGTCAAAGTCTTCATGAAAATCTGCAT 5582606 >seq26 Length=21800395 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | ||| | |||||||||||| || || || |||||||| || | Sbjct 5591668 CCACCACGAAGCCTCAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGTC 5591727 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | ||| | ||||| | ||| ||||| || | ||||| | ||||| || ||| Sbjct 5591728 AAAGTTCAACCATCTTCCAGTTGCTTGCCTGCAAAAATCAATCTTTGTTGATCAGGGGGA 5591787 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || ||| || ||| |||| |||||||| | |||||| Sbjct 5591788 ATACCTTCCTTATCTTGTATCTTGACCTTGACATTTTCAATAGTATCAGACTGTTCTACC 5591847 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | | ||||| || || |||| ||| || | ||||| ||||| Sbjct 5591848 TCAAGCATGATGGTCTTCCCCGTCAAAGTCTTCAAGAAAATCTGCAT 5591894 >seq65 Length=13810318 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || ||||| || |||||||| ||| | | ||| | |||||| Sbjct 5575234 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGGAAGTTCGGCCATCTTCT 5575293 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| ||||| | ||| ||| ||||| || ||| || ||||||||||| Sbjct 5575294 AGCTGTTTTCCAGCAAAAATCGGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCCTGG 5575353 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| ||| | || |||||||| || ||| || || | || ||||| || Sbjct 5575354 ATTTTGGCTTTGACATTCTCGATAGTATCACTGGGTTCAACCTCAAGAGTGATGGTCTTG 5575413 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||| || || ||||| || |||| Sbjct 5575414 CTCGTCAGGGTCTTCACAAAGATCCGCAT 5575442 >seq365 Length=1348131 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 14977 AGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTG 15036 || || || ||||| || |||||||| || |||| || | ||||||| |||||| Sbjct 790449 AGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTTGGCCATCTTCTAGTTGTTTT 790390 Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 | ||| | ||||||| |||| || ||| || ||||||||||| |||||| | Sbjct 790389 CTAGCAAAAATCAAACATTGTTCATCTGGTGGGATACCTTCCTTGTCCTGGATTTTGGCT 790330 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| | || ||| |||| || ||| || || | || ||||| || || |||| Sbjct 790329 TTGACATTCTCGATAATATCACTGGGTTCAACCTCAAGAGTGATGGTCTTGCCCATCAGG 790270 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || Sbjct 790269 GTCTTCACAAAGATCTGTAT 790250 >seq93 Length=11044861 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||||||||| || || || |||||||| || | ||||| | ||||| Sbjct 4041699 AACAAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAATTCGACCATCTTC 4041640 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| ||||| | | ||||| ||||| || ||||| |||||||| || Sbjct 4041639 CAGTTGCTTGCCCACAAAAATCAATTTTTGTTGATCAGGGGGAATACCTTCCTTATCTTG 4041580 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| |||| |||||||| ||| || || | || || || | Sbjct 4041579 TATCTTGGCCTTGACATTTTCAATAGTATCAGACGGTTCGACCTCAAGCGTGATAGTCTC 4041520 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| ||| || |||||||| ||||| Sbjct 4041519 CCCTGTCAAAGTCTTCACAAAAATCTGCAT 4041490 >seq23 Length=22081990 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || || || ||||| || || | | ||| | |||| ||||| Sbjct 21845118 TGAAGGGTAGACTCCTTCTGAATGTTATAGTCAGACAAAGTTCATCCATCTTTCAATTGC 21845177 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||| | || | ||||| | ||||| || ||||| |||| ||| || || ||| Sbjct 21845178 TTGTCCGCAAAAATCAATCTTTGTTGATCAGGGGGAATACCTTTCTTATCTTGTATCTTG 21845237 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| ||||||| | ||| || || | ||| ||||| || |||||| Sbjct 21845238 GCCTTGACATTTTCAATAGTATTGGATGGTTCGACCTCAAGGGTGATGGTCTTCCCTGTC 21845297 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | ||| || |||||||| ||||| Sbjct 21845298 AAAGTCTTCACAAAAATCTGCAT 21845320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357383698007210