Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq85 95.1 1e-14 seq118 84.2 2e-11 >seq85 Length=11587828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| |||| || |||||||| || ||| |||| ||| | || || | Sbjct 256587 CGCAGCACCAAGTGTAGAGTGGACTCTTTCTGGATAATGTAGTCGGAGAGAGTTCGGCCA 256528 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || ||||||||||||||||| | |||| || | |||||| || || || || ||||| Sbjct 256527 TCTTCTAGCTGTTTTCCAGCAAAAATCAGACGTTACTGATCTGGTGGGATACCTTCCTTT 256468 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| |||| | |||| || || | || || || | || | Sbjct 256467 TCCTGGATTTTGGCTTTGACATTCTCGATAGTATCACTGGGTTCAACCTCAAGAGTGATA 256408 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 256407 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 256373 >seq118 Length=9585089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || || | | Sbjct 4426947 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTTCTGCCA 4426888 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || || || |||||||||||| Sbjct 4426887 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 4426828 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||||| | ||| || || | ||| | Sbjct 4426827 TCCTGGATCTTGGCCTTGACATTCTCGATAGTGTCACTGGGCTCCACCTCCAAGGTGATG 4426768 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 4426767 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4426732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || || | | Sbjct 4427857 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTTCTGCCA 4427798 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || || || |||||||||||| Sbjct 4427797 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 4427738 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||||| | ||| || || | ||| | Sbjct 4427737 TCCTGGATCTTGGCCTTGACATTCTCGATAGTGTCACTGGGCTCCACCTCCAAGGTGATG 4427678 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 4427677 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4427642 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || || | | Sbjct 4428768 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTTCTGCCA 4428709 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || || || |||||||||||| Sbjct 4428708 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 4428649 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||||| | ||| || || | ||| | Sbjct 4428648 TCCTGGATCTTGGCCTTGACATTCTCGATAGTGTCACTGGGCTCCACCTCCAAGGTGATG 4428589 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 4428588 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4428553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || || | | Sbjct 4428996 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTTCTGCCA 4428937 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || || || |||||||||||| Sbjct 4428936 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 4428877 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||||| | ||| || || | ||| | Sbjct 4428876 TCCTGGATCTTGGCCTTGACATTCTCGATAGTGTCACTGGGCTCCACCTCCAAGGTGATG 4428817 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 4428816 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4428781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || || | | Sbjct 4429905 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTTCTGCCA 4429846 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || || || |||||||||||| Sbjct 4429845 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 4429786 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||||| | ||| || || | ||| | Sbjct 4429785 TCCTGGATCTTGGCCTTGACATTCTCGATAGTGTCACTGGGCTCCACCTCCAAGGTGATG 4429726 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 4429725 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4429690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || || | | Sbjct 4430359 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTGCCA 4430300 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || || || |||||||||||| Sbjct 4430299 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 4430240 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||||| | ||| || || | ||| | Sbjct 4430239 TCCTGGATCTTGGCCTTGACATTCTCGATAGTGTCACTGGGCTCCACCTCCAAGGTGATG 4430180 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 4430179 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4430144 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || || | | Sbjct 4426493 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTTCTGCCA 4426434 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || || || |||||||||||| Sbjct 4426433 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 4426374 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||||| | ||| || || | ||| | Sbjct 4426373 TCCTGGATCTTGGCCTTGACATTCTCGATAGTGTCACTGGGCTCCACCTCCAAGGTGATG 4426314 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 4426313 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4426279 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || || | ||| || ||||| || || Sbjct 4428067 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTTCTGCCATCTTCCAGCTGCTTGCCT 4428008 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 4428007 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 4427948 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 4427947 ACATTCTCGATAGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTC 4427888 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 4427887 TTCACAAAGATCTGCATG 4427870 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || || | ||| || ||||| || || Sbjct 4429659 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTTCTGCCATCTTCCAGCTGCTTGCCT 4429600 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 4429599 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 4429540 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 4429539 ACATTCTCGATAGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTCAGGGTC 4429480 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 4429479 TTCACAAAGATCTGCATG 4429462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489471193440