Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq17 129 8e-25
>seq17
Length=22518727
Score = 129 bits (142), Expect = 8e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || ||||||||||| ||| ||||||| || ||||| ||||| || | || || ||
Sbjct 12061307 GTCTGGAACAACTGCTCATCATCCCATTCAGGATGTTCCTGTTTAAGGATGTCACACACT 12061366
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
| ||| ||||| | |||||||| || || |||||||| ||||| || || | |||||
Sbjct 12061367 CGGTTATGTTCCCGAAGCCATATTGTAGCATACATCATCAAACCTGGAACCAGGCCAAAT 12061426
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
||||| | ||| || ||||| | ||||| || || || | || | || | ||| |
Sbjct 12061427 ACTTCTTGCCCAACAGCAAATCTCAGATGCTCAGGGACATGAGGTGGGTAGATCATTTCT 12061486
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967
|||| || ||||| || ||| ||||| | ||| || ||||| ||||
Sbjct 12061487 GCCTGCGTATCTTTCACTAAGGGCGGATATACTTCTCCATCAATTACCT 12061535
Score = 127 bits (140), Expect = 3e-24
Identities = 199/285 (70%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||||||||| ||||| || || || ||||| || | || || || | ||
Sbjct 12059243 AAGGGACATCCCTTTACATTATTGCAGATTAGTGACTGGATTGAGGCTGTATTGATAATT 12059302
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
|| |||||| || || || || ||||| || |||||||| | ||||| ||||| |
Sbjct 12059303 TCAAAACCTCTATCTCCACCAAAAGTGCTAGGCTTCCAGTAGTCAGGGGAACAGATTGGG 12059362
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| ||||||| ||||| | || || || || || || || | ||| | || || |||
Sbjct 12059363 TTACCCATGAGTCCTTTGAGTGAGAAGGGTGCTCCAAGTTCAACCATGGTTTCTCCAAAG 12059422
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|||||||| || || ||| |||| || | | |||| || | || | || || |
Sbjct 12059423 ATGGCACCTGGGCGAGGTCTTTCTACTAGCAGACCAGGATACAACTCCATAGAATCAATA 12059482
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| ||||||| ||||||| ||| ||||| || || ||||| |||
Sbjct 12059483 TCACCATAGACAGCTTCCAGCTCAGCAGCCATTTCTTTCTCTCCT 12059527
Score = 98.7 bits (108), Expect = 1e-15
Identities = 198/290 (68%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491
||| || ||||| || || | ||| ||||| || | |||| ||||| || | | |
Sbjct 12060292 CCGGCCAGCAATTTGCCTCGAGAATGATTCCACCATGTGGGAAATTCCATGTTCCAGTAA 12060351
Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551
|| || |||||||| | ||| || | |||| |||| ||| || | ||
Sbjct 12060352 TATAGAGTTGTTGTAGAGGAATTGCTGATAACTGTACTCTTTGTCCTTGATTTGGAAGGT 12060411
Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611
|| || | |||| ||||||| | |||||||| || ||||| || || |||||||| ||
Sbjct 12060412 GTCGGGGAGTAGAGGATGCCAGTGATAGAGGGTGTTAAACTCAGCAGCAATTCGGTTTTG 12060471
Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669
||| || ||| || ||| |||||| | || |||||||| | || | |||||| ||
Sbjct 12060472 GTATTGGAAGTGCTGGTT--GAACAGCAGTTCTGGGTCAAACTTCAGTTTGAAGTGATAA 12060529
Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
|| || | ||||||||||| | | || | ||| ||||| || || ||
Sbjct 12060530 CCACTCAAGTGCTGGACATAATCTTCAATCACAATCTTAATAGTCTCACC 12060579
Score = 96.9 bits (106), Expect = 5e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181
||||||||||| |||| | || | ||||| || || |||| || ||| ||||
Sbjct 12062828 CTTACCCCATGTCCCAGTGCTTTTGTGAAGGCTGGGCCTCTGTGATGGTCTGTCTTAAAG 12062887
Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241
|| ||||| || || ||||| | || || || ||||||| || ||||| ||||||||
Sbjct 12062888 AACTGGTGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATCA 12062947
Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
|| ||||| |||||| | || || ||| |||||||||| | | || || || ||
Sbjct 12062948 GGAATAAACTTCCTCCTCAGAAGAAATTTTTCCACAATCTCTTTGGATTCAGGAAG 12063003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723710757180400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |