Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq17 129 8e-25 >seq17 Length=22518727 Score = 129 bits (142), Expect = 8e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| ||| ||||||| || ||||| ||||| || | || || || Sbjct 12061307 GTCTGGAACAACTGCTCATCATCCCATTCAGGATGTTCCTGTTTAAGGATGTCACACACT 12061366 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | ||| ||||| | |||||||| || || |||||||| ||||| || || | ||||| Sbjct 12061367 CGGTTATGTTCCCGAAGCCATATTGTAGCATACATCATCAAACCTGGAACCAGGCCAAAT 12061426 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | ||| || ||||| | ||||| || || || | || | || | ||| | Sbjct 12061427 ACTTCTTGCCCAACAGCAAATCTCAGATGCTCAGGGACATGAGGTGGGTAGATCATTTCT 12061486 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 |||| || ||||| || ||| ||||| | ||| || ||||| |||| Sbjct 12061487 GCCTGCGTATCTTTCACTAAGGGCGGATATACTTCTCCATCAATTACCT 12061535 Score = 127 bits (140), Expect = 3e-24 Identities = 199/285 (70%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||||||||| ||||| || || || ||||| || | || || || | || Sbjct 12059243 AAGGGACATCCCTTTACATTATTGCAGATTAGTGACTGGATTGAGGCTGTATTGATAATT 12059302 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 || |||||| || || || || ||||| || |||||||| | ||||| ||||| | Sbjct 12059303 TCAAAACCTCTATCTCCACCAAAAGTGCTAGGCTTCCAGTAGTCAGGGGAACAGATTGGG 12059362 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || ||||||| ||||| | || || || || || || || | ||| | || || ||| Sbjct 12059363 TTACCCATGAGTCCTTTGAGTGAGAAGGGTGCTCCAAGTTCAACCATGGTTTCTCCAAAG 12059422 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||||| || || ||| |||| || | | |||| || | || | || || | Sbjct 12059423 ATGGCACCTGGGCGAGGTCTTTCTACTAGCAGACCAGGATACAACTCCATAGAATCAATA 12059482 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||||| ||||||| ||| ||||| || || ||||| ||| Sbjct 12059483 TCACCATAGACAGCTTCCAGCTCAGCAGCCATTTCTTTCTCTCCT 12059527 Score = 98.7 bits (108), Expect = 1e-15 Identities = 198/290 (68%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || ||||| || || | ||| ||||| || | |||| ||||| || | | | Sbjct 12060292 CCGGCCAGCAATTTGCCTCGAGAATGATTCCACCATGTGGGAAATTCCATGTTCCAGTAA 12060351 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 || || |||||||| | ||| || | |||| |||| ||| || | || Sbjct 12060352 TATAGAGTTGTTGTAGAGGAATTGCTGATAACTGTACTCTTTGTCCTTGATTTGGAAGGT 12060411 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || || | |||| ||||||| | |||||||| || ||||| || || |||||||| || Sbjct 12060412 GTCGGGGAGTAGAGGATGCCAGTGATAGAGGGTGTTAAACTCAGCAGCAATTCGGTTTTG 12060471 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||| || ||| || ||| |||||| | || |||||||| | || | |||||| || Sbjct 12060472 GTATTGGAAGTGCTGGTT--GAACAGCAGTTCTGGGTCAAACTTCAGTTTGAAGTGATAA 12060529 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || || | ||||||||||| | | || | ||| ||||| || || || Sbjct 12060530 CCACTCAAGTGCTGGACATAATCTTCAATCACAATCTTAATAGTCTCACC 12060579 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||||||||| |||| | || | ||||| || || |||| || ||| |||| Sbjct 12062828 CTTACCCCATGTCCCAGTGCTTTTGTGAAGGCTGGGCCTCTGTGATGGTCTGTCTTAAAG 12062887 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || ||||| || || ||||| | || || || ||||||| || ||||| |||||||| Sbjct 12062888 AACTGGTGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATCA 12062947 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || ||||| |||||| | || || ||| |||||||||| | | || || || || Sbjct 12062948 GGAATAAACTTCCTCCTCAGAAGAAATTTTTCCACAATCTCTTTGGATTCAGGAAG 12063003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723710757180400