Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq48 120 3e-22
seq8 111 2e-19
seq179 98.7 1e-15
seq71 93.3 5e-14
seq69 91.5 2e-13
seq62 84.2 2e-11
>seq48
Length=16487017
Score = 120 bits (132), Expect = 3e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| |||||||| || | |||||| ||||| ||||| |||||||| | |||| ||| |
Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| || ||||||||||
Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721
Query 19103 CAAC 19106
| ||
Sbjct 7775720 CTAC 7775717
Score = 100 bits (110), Expect = 3e-16
Identities = 102/131 (78%), Gaps = 4/131 (3%)
Strand=Plus/Minus
Query 18623 CATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTC 18680
||||||||| |||||||||||| || || || ||| ||||||||| | ||||||||
Sbjct 7780129 CATCCAAAGTAAAAGAATTCTCAG--TTGGACTTGACATCACTCCCATTCTCTGATATTC 7780072
Query 18681 GGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATC 18740
| ||||| || |||||||| || ||||| || || | || ||| |||||||||||
Sbjct 7780071 TCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCAGAGAGATATTCTCCATAAAATC 7780012
Query 18741 AAATGGATTTT 18751
|||||| ||||
Sbjct 7780011 AAATGGGTTTT 7780001
>seq8
Length=27308231
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || | |||||||| || ||||| || |
Sbjct 9728538 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 9728597
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||||| |||||| || || || ||||| || ||||| || || ||||| |
Sbjct 9728598 TAAGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAATG 9728657
Query 19103 CAACTAGTCTTTCTCC 19118
|||| | |||||||||
Sbjct 9728658 CAACCACTCTTTCTCC 9728673
>seq179
Length=6459238
Score = 98.7 bits (108), Expect = 1e-15
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| |||||||| ||||| || || | ||| ||| |||| || | ||| || ||||
Sbjct 3615050 TCCAACCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 3615109
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| |||||||||||||| || || ||||||||||| ||||| | | || |
Sbjct 3615110 TCAAAGACTGACTCTGATCAATGAACGCTCCTCTATCAGCCGCCATCTTGATAACAGTTT 3615169
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| |||| || ||||| || || ||||| | || || | |||||| ||
Sbjct 3615170 TCTGTGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCTTCAGG 3615218
Score = 93.3 bits (102), Expect = 5e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || || ||||| || |||| || || || || || ||||| || ||
Sbjct 3619869 TGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 3619928
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
|||||||| || ||||| |||||||| || || || ||||| | |||| | ||| ||
Sbjct 3619929 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAACTG 3619988
Query 47448 TTTCTTACTCCATA 47461
||||| | |||||
Sbjct 3619989 TTTCTGATGCCATA 3620002
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 48443 AATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTT 48502
||| ||||||||| ||||||| ||| ||| | | || || || ||||| || ||
Sbjct 3633774 AATGTAACTTCCAGTAGCTCTGATACAACTCACAGCAACTCCAATGCCACCAGCTGACTT 3633833
Query 48503 AGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562
|| || || |||||| | || | || |||||||| ||||| |||||||||||| ||||
Sbjct 3633834 GGAAATCAGTGCACACTGCTTTAATGTGTCATAAATGCCTTCAATACTATCATCTTTCAT 3633893
Query 48563 ATTTAATAGAAAACAACTA 48581
| | | || || ||||||
Sbjct 3633894 ACTCAGAAGGAAGCAACTA 3633912
>seq71
Length=13082442
Score = 93.3 bits (102), Expect = 5e-14
Identities = 111/150 (74%), Gaps = 7/150 (5%)
Strand=Plus/Minus
Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCT---CTTCATTAGAATTCATTACTCCCATT 18669
|| || || |||||||||| |||||||| || || | ||| ||| |||| ||
Sbjct 3041161 TAGAAGTCTACATCCAAAGTAAAAGAATCCTTAGCTGGACTAG----CATCACTCTTATC 3041106
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| |||||||| ||||| || |||||||| ||| |||| || |||||||| |||
Sbjct 3041105 CTCTGATATTCTCTTACTCTCTTCTCAAAGAAGTTAATTTTCCCTTCTAATGAAATATTC 3041046
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTA 18759
|||||| | ||||||||||||| ||| |||
Sbjct 3041045 TCCATATAGTCAAATGGATTTTCTACTTTA 3041016
>seq69
Length=13141271
Score = 91.5 bits (100), Expect = 2e-13
Identities = 188/278 (68%), Gaps = 10/278 (4%)
Strand=Plus/Minus
Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCTCTTC---ATTAGAATTCATTACTCCCATT 18669
||||| || |||||||| |||||||| ||| | ||| || |||| | || |||
Sbjct 4564730 TAAAAGTCTGAATCCAAAGTAAAAGAATCCTCAGCTGTATTTGACTTCACTTCT---ATT 4564674
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||||| | ||||| ||||||||| | || | |||| || || |||
Sbjct 4564673 TGCTGATATTTTTCTACTCTCTTTTCAAAGCAGTTTTCTGTTCC----AAAGAGATATTC 4564618
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
|| || |||| ||||||||||| ||| ||| || || | || ||| ||| |||
Sbjct 4564617 TCAATGAAATTAAATGGATTTTCTACCTTAATAATCTTGCTAAAATCTAGTTCCAATGTA 4564558
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
||| | || |||||||||| ||| || ||||| | | ||||||||| || ||
Sbjct 4564557 AGTTTGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTGAAATTCATTCTAATCAAC 4564498
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTAT 18887
|| | ||| | || || || | || || ||||||||
Sbjct 4564497 TTCAGAGGCAAAGCCTCAGTCAAGAAGTCCTGTTCTAT 4564460
>seq62
Length=14134332
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/157 (73%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716
||| | ||| || || ||||||| | | | |||| |||||||| |||||||| | ||
Sbjct 12212249 CATCAGTCCTATCTTCTGATATTTTCCTAATTTTTTCTCAAAGAAGTTAGTTTTCTCATC 12212308
Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATT-ATATAtttttttGAATC 18775
||||| |||| | ||| || ||||||||||||| | | || ||| || || | || |
Sbjct 12212309 AAATGAAATACTCTACATGAAGTCAAATGGATTTTCTGCTTTCATA-ATCTTGTAAAAAC 12212367
Query 18776 CTAATTCTAATAGTAGTCTATCCGCTACAAATTTAAT 18812
| | ||| | | | |||| || ||||||||||||||
Sbjct 12212368 CCAGTTCCA--ACTTGTCTCTCTGCTACAAATTTAAT 12212402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562095407757840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |