Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq48 120 3e-22 seq8 111 2e-19 seq179 98.7 1e-15 seq71 93.3 5e-14 seq69 91.5 2e-13 seq62 84.2 2e-11 >seq48 Length=16487017 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||| ||||| ||||| |||||||| | |||| ||| | Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || |||||||||| Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721 Query 19103 CAAC 19106 | || Sbjct 7775720 CTAC 7775717 Score = 100 bits (110), Expect = 3e-16 Identities = 102/131 (78%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 18623 CATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTC 18680 ||||||||| |||||||||||| || || || ||| ||||||||| | |||||||| Sbjct 7780129 CATCCAAAGTAAAAGAATTCTCAG--TTGGACTTGACATCACTCCCATTCTCTGATATTC 7780072 Query 18681 GGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATC 18740 | ||||| || |||||||| || ||||| || || | || ||| ||||||||||| Sbjct 7780071 TCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCAGAGAGATATTCTCCATAAAATC 7780012 Query 18741 AAATGGATTTT 18751 |||||| |||| Sbjct 7780011 AAATGGGTTTT 7780001 >seq8 Length=27308231 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | |||||||| || ||||| || | Sbjct 9728538 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 9728597 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||||| |||||| || || || ||||| || ||||| || || ||||| | Sbjct 9728598 TAAGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAATG 9728657 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||||||||| Sbjct 9728658 CAACCACTCTTTCTCC 9728673 >seq179 Length=6459238 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| ||| |||| || | ||| || |||| Sbjct 3615050 TCCAACCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 3615109 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| |||||||||||||| || || ||||||||||| ||||| | | || | Sbjct 3615110 TCAAAGACTGACTCTGATCAATGAACGCTCCTCTATCAGCCGCCATCTTGATAACAGTTT 3615169 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | |||| || ||||| || || ||||| | || || | |||||| || Sbjct 3615170 TCTGTGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCTTCAGG 3615218 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || || ||||| || |||| || || || || || ||||| || || Sbjct 3619869 TGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 3619928 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || ||||| |||||||| || || || ||||| | |||| | ||| || Sbjct 3619929 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAACTG 3619988 Query 47448 TTTCTTACTCCATA 47461 ||||| | ||||| Sbjct 3619989 TTTCTGATGCCATA 3620002 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 48443 AATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTT 48502 ||| ||||||||| ||||||| ||| ||| | | || || || ||||| || || Sbjct 3633774 AATGTAACTTCCAGTAGCTCTGATACAACTCACAGCAACTCCAATGCCACCAGCTGACTT 3633833 Query 48503 AGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 || || || |||||| | || | || |||||||| ||||| |||||||||||| |||| Sbjct 3633834 GGAAATCAGTGCACACTGCTTTAATGTGTCATAAATGCCTTCAATACTATCATCTTTCAT 3633893 Query 48563 ATTTAATAGAAAACAACTA 48581 | | | || || |||||| Sbjct 3633894 ACTCAGAAGGAAGCAACTA 3633912 >seq71 Length=13082442 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/150 (74%), Gaps = 7/150 (5%) Strand=Plus/Minus Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCT---CTTCATTAGAATTCATTACTCCCATT 18669 || || || |||||||||| |||||||| || || | ||| ||| |||| || Sbjct 3041161 TAGAAGTCTACATCCAAAGTAAAAGAATCCTTAGCTGGACTAG----CATCACTCTTATC 3041106 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | |||||||| ||||| || |||||||| ||| |||| || |||||||| ||| Sbjct 3041105 CTCTGATATTCTCTTACTCTCTTCTCAAAGAAGTTAATTTTCCCTTCTAATGAAATATTC 3041046 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTA 18759 |||||| | ||||||||||||| ||| ||| Sbjct 3041045 TCCATATAGTCAAATGGATTTTCTACTTTA 3041016 >seq69 Length=13141271 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/278 (68%), Gaps = 10/278 (4%) Strand=Plus/Minus Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCTCTTC---ATTAGAATTCATTACTCCCATT 18669 ||||| || |||||||| |||||||| ||| | ||| || |||| | || ||| Sbjct 4564730 TAAAAGTCTGAATCCAAAGTAAAAGAATCCTCAGCTGTATTTGACTTCACTTCT---ATT 4564674 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||||| | ||||| ||||||||| | || | |||| || || ||| Sbjct 4564673 TGCTGATATTTTTCTACTCTCTTTTCAAAGCAGTTTTCTGTTCC----AAAGAGATATTC 4564618 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 || || |||| ||||||||||| ||| ||| || || | || ||| ||| ||| Sbjct 4564617 TCAATGAAATTAAATGGATTTTCTACCTTAATAATCTTGCTAAAATCTAGTTCCAATGTA 4564558 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||| | || |||||||||| ||| || ||||| | | ||||||||| || || Sbjct 4564557 AGTTTGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTGAAATTCATTCTAATCAAC 4564498 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTAT 18887 || | ||| | || || || | || || |||||||| Sbjct 4564497 TTCAGAGGCAAAGCCTCAGTCAAGAAGTCCTGTTCTAT 4564460 >seq62 Length=14134332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| | ||| || || ||||||| | | | |||| |||||||| |||||||| | || Sbjct 12212249 CATCAGTCCTATCTTCTGATATTTTCCTAATTTTTTCTCAAAGAAGTTAGTTTTCTCATC 12212308 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATT-ATATAtttttttGAATC 18775 ||||| |||| | ||| || ||||||||||||| | | || ||| || || | || | Sbjct 12212309 AAATGAAATACTCTACATGAAGTCAAATGGATTTTCTGCTTTCATA-ATCTTGTAAAAAC 12212367 Query 18776 CTAATTCTAATAGTAGTCTATCCGCTACAAATTTAAT 18812 | | ||| | | | |||| || |||||||||||||| Sbjct 12212368 CCAGTTCCA--ACTTGTCTCTCTGCTACAAATTTAAT 12212402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562095407757840