Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq48 147 3e-30 seq71 125 8e-24 >seq48 Length=16487017 Score = 147 bits (162), Expect = 3e-30 Identities = 110/129 (85%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| || | |||||| ||||| |||||||| ||||||||||||| ||| || Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || |||||||| |||||||| ||| Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 7775719 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 7775718 ACAACACGT 7775710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 |||||||| ||||| || | ||||||||||||||| || || ||||| ||||| || ||| Sbjct 7772386 ATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGA 7772327 Query 37506 AAACCATAAAAACACCTAGCTTC 37528 || ||||| ||||| | |||||| Sbjct 7772326 AAGCCATAGAAACAGCGAGCTTC 7772304 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | ||||||||||| |||| |||| || || || || || || |||| Sbjct 7780095 CATCACTCCCATTCTCTGATATTCTCCTACTC-TCTTCTCAAAGAAGTTGGTTTTCCCTT 7780037 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | || || ||||| ||||||||||||||||| || Sbjct 7780036 CCAGAGAGATATTCTCCATAAAATCAAATGGGTT 7780003 >seq71 Length=13082442 Score = 125 bits (138), Expect = 8e-24 Identities = 316/471 (67%), Gaps = 21/471 (4%) Strand=Plus/Minus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | | || | || |||| | ||||| |||||| |||| || | |||||| Sbjct 3040078 TTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATAAGTTCATT 3040019 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| | ||| || |||||||||| ||| || | ||| ||||| | || ||||| Sbjct 3040018 GGAAAAAGCTAAGCCAAGCATTAAACC---TTTCTTGAGCCAGAATATCGATGTGAAAGA 3039962 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 |||||||| || |||||||| |||||||| ||||| | || | ||| | |||| Sbjct 3039961 ATCAGAAAAG---ATTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCATATGTTGC 3039905 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||||| ||||| || || ||||||||| | ||| Sbjct 3039904 TTCTTTGTCTCCAATCCA--GCACAGTCCA----GCTTTCTTTTTAACACAAGGTAGTGT 3039851 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 |||||| | || |||||||| || |||||| ||| | |||||||| ||||| || Sbjct 3039850 TTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGTCAATAAG 3039792 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | || ||||||||||| || | ||||| | | || || || ||||| ||||| | Sbjct 3039791 GAGAC--TACATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGAAACAGCA 3039736 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 |||| | || || | | ||| || | | |||||| |||| ||| | || Sbjct 3039735 GGCTTAGGTTATCTGTA-TTTGTTGGCTCACTGCAGTACCAAGTTTGCATTTACTCTGCC 3039677 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACAT--ATTTTATA-AAATGTCTTTC 37630 ||| |||||||||||||| | |||| | | |||| |||| | |||| Sbjct 3039676 ATCCTGTGCTGCAAAGAAAGCCAATACATGCAATGTATATAAATATATTTC 3039626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592302688052240