Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq48 147 3e-30
seq71 125 8e-24
>seq48
Length=16487017
Score = 147 bits (162), Expect = 3e-30
Identities = 110/129 (85%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
||||||||||| || | |||||| ||||| |||||||| ||||||||||||| ||| ||
Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||| | ||||||||| ||||||||||| || |||||||| |||||||| |||
Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 7775719
Query 37320 ACAAGACGT 37328
|||| ||||
Sbjct 7775718 ACAACACGT 7775710
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505
|||||||| ||||| || | ||||||||||||||| || || ||||| ||||| || |||
Sbjct 7772386 ATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGA 7772327
Query 37506 AAACCATAAAAACACCTAGCTTC 37528
|| ||||| ||||| | ||||||
Sbjct 7772326 AAGCCATAGAAACAGCGAGCTTC 7772304
Score = 86.0 bits (94), Expect = 7e-12
Identities = 77/94 (82%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| ||||||||| | ||||||||||| |||| |||| || || || || || || ||||
Sbjct 7780095 CATCACTCCCATTCTCTGATATTCTCCTACTC-TCTTCTCAAAGAAGTTGGTTTTCCCTT 7780037
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
| || || ||||| ||||||||||||||||| ||
Sbjct 7780036 CCAGAGAGATATTCTCCATAAAATCAAATGGGTT 7780003
>seq71
Length=13082442
Score = 125 bits (138), Expect = 8e-24
Identities = 316/471 (67%), Gaps = 21/471 (4%)
Strand=Plus/Minus
Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222
||| |||| | | || | || |||| | ||||| |||||| |||| || | ||||||
Sbjct 3040078 TTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATAAGTTCATT 3040019
Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282
||||| | ||| || |||||||||| ||| || | ||| ||||| | || |||||
Sbjct 3040018 GGAAAAAGCTAAGCCAAGCATTAAACC---TTTCTTGAGCCAGAATATCGATGTGAAAGA 3039962
Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342
|||||||| || |||||||| |||||||| ||||| | || | ||| | ||||
Sbjct 3039961 ATCAGAAAAG---ATTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCATATGTTGC 3039905
Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402
| || |||||| ||||| || || ||||||||| | |||
Sbjct 3039904 TTCTTTGTCTCCAATCCA--GCACAGTCCA----GCTTTCTTTTTAACACAAGGTAGTGT 3039851
Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462
|||||| | || |||||||| || |||||| ||| | |||||||| ||||| ||
Sbjct 3039850 TTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGTCAATAAG 3039792
Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522
| || ||||||||||| || | ||||| | | || || || ||||| ||||| |
Sbjct 3039791 GAGAC--TACATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGAAACAGCA 3039736
Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582
|||| | || || | | ||| || | | |||||| |||| ||| | ||
Sbjct 3039735 GGCTTAGGTTATCTGTA-TTTGTTGGCTCACTGCAGTACCAAGTTTGCATTTACTCTGCC 3039677
Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACAT--ATTTTATA-AAATGTCTTTC 37630
||| |||||||||||||| | |||| | | |||| |||| | ||||
Sbjct 3039676 ATCCTGTGCTGCAAAGAAAGCCAATACATGCAATGTATATAAATATATTTC 3039626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592302688052240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |