Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq36 376 2e-99
seq208 129 5e-25
>seq36
Length=18184789
Score = 376 bits (416), Expect = 2e-99
Identities = 500/690 (72%), Gaps = 7/690 (1%)
Strand=Plus/Plus
Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825
|||||||| ||| || || | || |||||| | ||||| || | | |||| || |||
Sbjct 7685891 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTA 7685949
Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885
| ||||| |||||||| ||||| ||||| || || || | || || ||||| |||||
Sbjct 7685950 TATATGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGC 7686009
Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945
|||||||| || || || ||||| ||||| ||||| || || ||||| || ||||| ||
Sbjct 7686010 AATCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATC 7686069
Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30005
|| || | |||||| |||||||| || ||||| || | || || |||||||| |
Sbjct 7686070 TCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAG 7686129
Query 30006 GGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACAC 30062
| |||||| ||||| | ||||| |||| ||| ||||| || ||||| || ||||
Sbjct 7686130 AGCGTGGCATGGAGGTAATGCCATCAGAGG---AAGATCTTTAGGATTCCAAGCACACAT 7686186
Query 30063 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 30122
||||| | ||||| | || ||| | |||| ||| | | | ||||| || |||||
Sbjct 7686187 AATGATCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATC 7686246
Query 30123 CACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 30182
||| || || || || |||| |||| || |||| ||||| || ||||| |||||
Sbjct 7686247 CACTCCTTGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCA 7686306
Query 30183 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30242
|||||| || ||||| ||||||| ||||| || || ||| ||| ||| ||||||
Sbjct 7686307 CTGGAAGCCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTC 7686366
Query 30243 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30302
||||||||||| || || |||||||||||||| ||||| || || | |||||||| ||
Sbjct 7686367 CAAAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTT 7686426
Query 30303 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30362
| |||||||| || | | ||||||||||||||||||| || ||||||| || ||
Sbjct 7686427 AGCATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACAC 7686486
Query 30363 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAA 30422
| |||||| || || | ||||||| | |||| ||| ||| || | |||||
Sbjct 7686487 ACGCTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAA 7686546
Query 30423 CACGGACAAGACTCCCGTGCCCGTCCTGTC 30452
||| |||| | || |||||||| | |||
Sbjct 7686547 CACAGACACGGTGCCGGTGCCCGTGCGGTC 7686576
>seq208
Length=5466430
Score = 129 bits (142), Expect = 5e-25
Identities = 130/169 (77%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208
|||| || |||| ||||| || ||||| ||||||||||| || || || ||||||| |
Sbjct 1460261 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATATACAGGTCCCAAAT 1460202
Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
|||| || || ||| ||| ||| ||||||||||||||||| || || |||||||
Sbjct 1460201 CTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCGT 1460142
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
||||||| ||||| || || | |||||||| || | |||||||| ||
Sbjct 1460141 CCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACC 1460093
Score = 122 bits (134), Expect = 7e-23
Identities = 126/165 (76%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927
||| || |||| |||||| |||||||| || || || ||||| ||||||||||| || ||
Sbjct 1463615 TAGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGG 1463556
Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987
|| ||||| ||||| || || || | |||||| |||||||| || ||||| || |
Sbjct 1463555 CACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAA 1463496
Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
|| || |||||||| | | |||||| ||||| || ||||| ||
Sbjct 1463495 TACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATCAG 1463451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408608108068538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |