Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq59 172 1e-37 seq134 141 2e-28 seq50 89.7 1e-12 >seq59 Length=14301540 Score = 172 bits (190), Expect = 1e-37 Identities = 176/228 (77%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 241408 GTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGAC--GCGGTA 241465 ||| | ||| |||| ||| ||||| || |||||||| || || || | ||| || || Sbjct 1559794 GTGGCTCAGCACCTTCTGCTTGAGCTGCGCCACCTGTTCACGGAGCA--GACTAGCCGTG 1559851 Query 241466 TTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATG 241525 || ||||| || ||||| || ||||| || |||||| || ||||| || || |||||| Sbjct 1559852 TTCGACAGCCCAGCGTTTTCGGACTTCAGTGTCTTCACCTTGTCCTCGAGTCGAGCGATG 1559911 Query 241526 CGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGT 241585 || |||||||| || |||||| |||||||| |||| |||||||| |||| || | | Sbjct 1559912 CGCTCCAGTTTCCGTTTGCGGCACTTGGTGGCCGCCAGCCGGTTCCGCAGTCGTTTCCTT 1559971 Query 241586 TCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACTTGGGT 241633 ||| |||||||||| |||||||||||||||| ||| || ||| |||| Sbjct 1559972 TCCACCTTGATGCGCTCCTGGTCCTCCATGTTGATGGGTGACACGGGT 1560019 >seq134 Length=8699209 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| || |||||||| || || |||| | || || | ||| Sbjct 6056332 AGCACCTTCTGCTTGAGCTGCGCCACCTGCTCACGGAGAAGGTTGGCCGTGGACGCCAGC 6056273 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| |||||||| ||||||| ||| || ||||| Sbjct 6056272 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCGAGCCGCGAGATCCGCTCCAGC 6056213 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || ||| |||||| |||| |||||| | ||||||||| || | ||| || ||||||||| Sbjct 6056212 TTCCGCTTGCGGCACTTGGAGGCTGCGATGCGGTTCCGCAGCCGCTTGCGCTCCGCCTTG 6056153 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| |||||| ||||||||||| || ||| Sbjct 6056152 ATGCGCTCCTGGGTGTCCATGTCGATGGGTGAC 6056120 >seq50 Length=16033361 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 ||||| || |||||||| || ||||| || || ||||| | ||||| |||| || Sbjct 14161058 TTCACCTTTTCCTCCAGTCGGGCGATTCGCTCGAGTTTCCTTTTCCGGCACTTGGACGCA 14160999 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | || ||| | || ||||||||||| |||||| |||||||||| Sbjct 14160998 GCGATGCGGTTCCTCATTCGCTTCCTCTCGGCCTTGATGCGCTCCTGGGACTCCATGTCG 14160939 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 14160938 ATAGGGGAC 14160930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931510606231040