Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq59 172 1e-37
seq134 141 2e-28
seq50 89.7 1e-12
>seq59
Length=14301540
Score = 172 bits (190), Expect = 1e-37
Identities = 176/228 (77%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 241408 GTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGAC--GCGGTA 241465
||| | ||| |||| ||| ||||| || |||||||| || || || | ||| || ||
Sbjct 1559794 GTGGCTCAGCACCTTCTGCTTGAGCTGCGCCACCTGTTCACGGAGCA--GACTAGCCGTG 1559851
Query 241466 TTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATG 241525
|| ||||| || ||||| || ||||| || |||||| || ||||| || || ||||||
Sbjct 1559852 TTCGACAGCCCAGCGTTTTCGGACTTCAGTGTCTTCACCTTGTCCTCGAGTCGAGCGATG 1559911
Query 241526 CGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGT 241585
|| |||||||| || |||||| |||||||| |||| |||||||| |||| || | |
Sbjct 1559912 CGCTCCAGTTTCCGTTTGCGGCACTTGGTGGCCGCCAGCCGGTTCCGCAGTCGTTTCCTT 1559971
Query 241586 TCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACTTGGGT 241633
||| |||||||||| |||||||||||||||| ||| || ||| ||||
Sbjct 1559972 TCCACCTTGATGCGCTCCTGGTCCTCCATGTTGATGGGTGACACGGGT 1560019
>seq134
Length=8699209
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
|| |||| ||| ||||| || |||||||| || || |||| | || || | |||
Sbjct 6056332 AGCACCTTCTGCTTGAGCTGCGCCACCTGCTCACGGAGAAGGTTGGCCGTGGACGCCAGC 6056273
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | |||||| |||||| |||||||| ||||||| ||| || |||||
Sbjct 6056272 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCGAGCCGCGAGATCCGCTCCAGC 6056213
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|| ||| |||||| |||| |||||| | ||||||||| || | ||| || |||||||||
Sbjct 6056212 TTCCGCTTGCGGCACTTGGAGGCTGCGATGCGGTTCCGCAGCCGCTTGCGCTCCGCCTTG 6056153
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| |||||| ||||||||||| || |||
Sbjct 6056152 ATGCGCTCCTGGGTGTCCATGTCGATGGGTGAC 6056120
>seq50
Length=16033361
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
||||| || |||||||| || ||||| || || ||||| | ||||| |||| ||
Sbjct 14161058 TTCACCTTTTCCTCCAGTCGGGCGATTCGCTCGAGTTTCCTTTTCCGGCACTTGGACGCA 14160999
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | || ||| | || ||||||||||| |||||| ||||||||||
Sbjct 14160998 GCGATGCGGTTCCTCATTCGCTTCCTCTCGGCCTTGATGCGCTCCTGGGACTCCATGTCG 14160939
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 14160938 ATAGGGGAC 14160930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931510606231040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |