Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq37 122 1e-22 seq94 102 1e-16 seq26 102 1e-16 seq140 98.7 1e-15 seq93 98.7 1e-15 seq73 98.7 1e-15 seq75 95.1 2e-14 seq159 93.3 6e-14 seq160 91.5 2e-13 seq23 91.5 2e-13 seq48 89.7 8e-13 seq46 89.7 8e-13 seq4 86.0 9e-12 seq60 84.2 3e-11 >seq37 Length=18181243 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || || || || ||||| || || || ||||| | || |||||| ||| Sbjct 5582606 ATGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTGTCT 5582665 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || || ||||||||||| ||||| || || || || ||| Sbjct 5582666 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 5582725 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || ||||| || |||||| ||||||| || || || || Sbjct 5582726 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5582785 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || || ||| | || |||||| | || |||| Sbjct 5582786 ATTCAGAAGGAGTCTACCCTTCATCTTGTTCTAAG 5582820 >seq94 Length=10919598 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | | || |||| || || || || ||| | || |||||| ||| Sbjct 5504694 ATGCAGATTTTTGTGAGGACTTTGATGGGGAAGACCATCACACTTGAGGTCGAACCCTCT 5504753 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || || ||||||||| | ||||| || || | || ||| Sbjct 5504754 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATCAGGAAGGTATTCCCTCTGATCAA 5504813 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || ||||| || |||||| ||||||| || || || || Sbjct 5504814 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5504873 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 5504874 ATTCAGAAGGAGTCTACCCTTCAT 5504897 >seq26 Length=21800395 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||| || || || || | | || || ||| | ||| Sbjct 5591894 ATGCAGATTTTCTTGAAGACTTTGACGGGGAAGACCATCATGCTTGAGGTAGAACAGTCT 5591835 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || || ||||||||||| ||||| || || || || ||| Sbjct 5591834 GATACTATTGAAAATGTCAAGGTCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 5591775 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || ||||| || |||||| ||||||| | || || || Sbjct 5591774 CAAAGATTGATTTTTGCAGGCAAGCAACTGGAAGATGGTTGAACTTTGACTGACTACAAC 5591715 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 5591714 ATTCAGAAGGAGTCTACCCTTCAT 5591691 >seq140 Length=8386802 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || || || || |||| || || || || || | || |||||| ||| Sbjct 635477 ATGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACGCTTGAGGTCGAACCGTCT 635418 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || || ||||||||||| ||||| || || || || ||| Sbjct 635417 GATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 635358 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || || ||||| || ||| || ||||||| || || || || Sbjct 635357 CAAAGATTGATTTTTGTGGGCAAGCAACTGGAAAATGGTTGAACTTTGTCTGACTACAAC 635298 Query 156003 AT 156004 || Sbjct 635297 AT 635296 >seq93 Length=11044861 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || | ||||| || | || |||||| ||| Sbjct 4041490 ATGCAGATTTTTGTGAAGACTTTGACAGGGGAGACTATCACGCTTGAGGTCGAACCGTCT 4041549 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || || ||||||||||| ||||| || || || || ||| Sbjct 4041550 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 4041609 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||| |||||||| || || ||||| || |||||| ||| ||| || || || || Sbjct 4041610 CAAAAATTGATTTTTGTGGGCAAGCAACTGGAAGATGGTCGAATTTTGTCTGACTACAAC 4041669 Query 156003 AT 156004 || Sbjct 4041670 AT 4041671 >seq73 Length=13007589 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 || |||||| ||||||| |||| ||| || || || ||||||||||||||||| Sbjct 8615707 GAGGTCGAACCATCTGATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAAGAAGGT 8615648 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || || || || |||||||||||||||| ||| || ||||| || |||||| ||||| Sbjct 8615647 ATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACT 8615588 Query 155988 TTATCAGATTATAATAT 156004 || || || || || || Sbjct 8615587 TTGTCTGACTACAACAT 8615571 >seq75 Length=12821919 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | | || ||||| || || || || | | || || ||| ||| Sbjct 2199966 ATGCAGATTTTTGTGGAGACTTTGACAGGGAAGACCATCATGCTTGAGGTTGAACCGTCT 2199907 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| |||| ||| || || || ||||||||||| ||||| || || || || ||| Sbjct 2199906 AATATTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 2199847 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| ||||||| || |||||| ||||||| || || || || Sbjct 2199846 CAAAGATTGATTTTTGCGAGTAAGCAACTGGAAGATCGTCGAACTTTGTCTGACTACAAC 2199787 Query 156003 AT 156004 || Sbjct 2199786 AT 2199785 >seq159 Length=7530659 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | ||| || || || || | | || |||||| ||| Sbjct 4974566 ATGCAGATTTTCGTGAAGACTTGGACGGGGAAGACCATCATGCTTGAGGTCGAACCGTCT 4974625 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || || |||||| |||| ||||| || || || | ||| Sbjct 4974626 GATACTATTGAAAATGTCAAGGCCAAGATACAAAATAAGGAAGGTATTCCCCCTCATCAA 4974685 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| |||| | ||||| || |||||| ||||||| || || || || Sbjct 4974686 CAAAGATTGATTTTTGCCAGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 4974745 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 4974746 ATTCAGAAGGAGTCTACCCTTCAT 4974769 >seq160 Length=7493426 Score = 91.5 bits (100), Expect = 2e-13 Identities = 129/180 (72%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||| | || ||| | || || ||||| || || || || || | || ||||| || Sbjct 3645962 AATGTAGATTTTTGTGAAGACTTTGACAGGGAAGACCATCACCCTCGAGATCGAACCGTC 3645903 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| |||| |||||||||| || ||||||||||| ||||| || || || || || Sbjct 3645902 CCATACTATTGAAAACGTGAAAGCCAAGATACAAGATAAGGAAGGTATTCC-CCTGATCA 3645844 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||||| ||| || || || |||| | |||||||||| || || || Sbjct 3645843 ACAAAGATTGATTTTTGCAGGCGGTCAACTGGAAGGTGGTTGAACTTTATCTGACTACAA 3645784 >seq23 Length=22081990 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || || || || || | || |||||| || Sbjct 21845320 ATGCAGATTTTTGTGAAGACTTTGACAGGGAAGACCATCACCCTTGAGGTCGAACCATCC 21845261 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| |||| ||| || || || ||||||||||| |||| || || || || ||| Sbjct 21845260 AATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGAAAGGTATTCCCCCTGATCAA 21845201 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| | ||||| | ||||| ||||||| || || ||||| Sbjct 21845200 CAAAGATTGATTTTTGCGGACAAGCAATTGAAAGATGGATGAACTTTGTCTGACTATAAC 21845141 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 21845140 ATTCAGAAGGAGTCTACCCTTCA 21845118 >seq48 Length=16487017 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||| || || || || || | || ||| || ||| Sbjct 8366676 ATGCAGATTTTCGTGAAGACTTTGATGGGGAAGACCATCACCCTTGAGGTCAAACCATCT 8366735 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || || ||||||||||| ||||| || || || || ||| Sbjct 8366736 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 8366795 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || || ||||| || |||| | |||||| || || || || Sbjct 8366796 CAAAGATTGATTTTTGTGGGCAAGCAACTGGAAGGTGGTCAAACTTTGTCTGACTACAAC 8366855 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 8366856 ATTCAGAAGGAGTCTACCCTTCAT 8366879 >seq46 Length=16939101 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||| || || || || || | || |||||| ||| Sbjct 5708280 ATGCAGATTTTCGTGAAGACTTTGACCGGGAAGACCATCACTCTTGAGGTCGAACCATCT 5708339 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || | ||| || || || |||||||||| || || | || || || ||| Sbjct 5708340 GACACTACTGAAAATGTCAAGGCCAAGGTACAAGATAAGGATGGTACTCCCCCTGATCAA 5708399 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || ||||| || |||||| ||||||| || || || || Sbjct 5708400 CAAAGATTGATTTTTGCAGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5708459 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 5708460 ATTCAGAAGGAGTCTACACTTCAT 5708483 >seq4 Length=36543856 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| ||| ||| || || || ||||||||||| ||||| || || || || Sbjct 27117918 TCTGATACCATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGAATTCCCCCTGAT 27117977 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||||| ||| || ||||| || |||||| ||||||| || || || Sbjct 27117978 CAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTAC 27118037 Query 156000 AATAT 156004 || || Sbjct 27118038 AACAT 27118042 >seq60 Length=14251744 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || || || || ||||| || || || || || | || ||| || || Sbjct 8688551 ATGCAGATTTTCATGAATACTTTGACAGGGAAGACCATCACCCTTGAGGTCAAACTGTCC 8688610 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| |||| ||| || || | ||||||||||||||||| || || | || || Sbjct 8688611 TATACTATTGAAAATGTCAAGGCCAGGATACAAGATAAAGAAGGTATTCCCCTTGATCAG 8688670 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||||| || || ||||| || |||||| ||||||| || || || || Sbjct 8688671 CAAAGATTGATTTTTGTGGGCAAGCAACTGGAAGATGGATGAACTTTGTCTGACTACAA 8688729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731854563149600