Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq5 170 2e-36
seq168 158 1e-32
seq701 152 6e-31
>seq5
Length=36077823
Score = 170 bits (188), Expect = 2e-36
Identities = 160/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 31707119 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 31707060
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| |
Sbjct 31707059 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 31707000
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| |||||||||| ||||||||
Sbjct 31706999 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 31706940
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| ||||| |||||||
Sbjct 31706939 GGACCTGCTTCAGCACTTTGTAGA 31706916
Score = 165 bits (182), Expect = 1e-34
Identities = 159/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||||||||| || | ||
Sbjct 31741373 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGAGAAGTGA 31741314
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| ||| |||||| || | ||||| |||| |
Sbjct 31741313 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCTGGCTATGCGCTCGAAGA 31741254
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| |||||||||| ||||||||
Sbjct 31741253 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 31741194
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| |||||||||||||
Sbjct 31741193 GGACCTGCTTCAGCACCTTGTAGA 31741170
Score = 154 bits (170), Expect = 2e-31
Identities = 158/205 (77%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCC-GCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCG 1254401
|| ||||||| || || | ||| | |||||||||||| ||||||||||| || | |
Sbjct 31739030 GCTTGGCCAGCTCCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTG 31739089
Query 1254402 ATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461
|| || ||||||||| |||||||||| ||| |||||| | ||||||| ||||
Sbjct 31739090 ATGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAG 31739149
Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521
||||||||||| || || ||||||| ||| | |||| |||||||||| |||||||
Sbjct 31739150 ATGTCGTTGACGAAGGAATTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGG 31739209
Query 1254522 TGCACCTGCTTGAGCACCTTGTAGA 1254546
|| |||||||| ||||| |||||||
Sbjct 31739210 TGGACCTGCTTCAGCACTTTGTAGA 31739234
Score = 143 bits (158), Expect = 3e-28
Identities = 156/204 (76%), Gaps = 6/204 (3%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| | ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 31720587 GCTTGGCCAG--CCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 31720644
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||| |||| |||||||||| ||| |||||| | ||||||| |||| |
Sbjct 31720645 TGGTGGAGCGTTTGT---AGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 31720701
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| |||||||||| ||| ||||
Sbjct 31720702 TGTCGTTGACGAAGGAGTTCATGATGCCCATAGCCTTGGAGGAGATGCCCGTGTC-GGGT 31720760
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| ||||| |||||||
Sbjct 31720761 GGACCTGCTTCAGCACTTTGTAGA 31720784
>seq168
Length=7028291
Score = 158 bits (174), Expect = 1e-32
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 2258694 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 2258635
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | |||||||| ||| ||||| | |||| || |||| |
Sbjct 2258634 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCTCCGGCGATCCGCTCGAAGA 2258575
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| |||||||||| ||||||||
Sbjct 2258574 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 2258515
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 2258514 GGACCTGCTTCAGCACCTTGTA 2258493
Score = 158 bits (174), Expect = 1e-32
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 2297762 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 2297703
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | |||||||| ||| ||||| | |||| || |||| |
Sbjct 2297702 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCTCCGGCGATCCGCTCGAAGA 2297643
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| |||||||||| ||||||||
Sbjct 2297642 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 2297583
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 2297582 GGACCTGCTTCAGCACCTTGTA 2297561
Score = 158 bits (174), Expect = 1e-32
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 2311004 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 2311063
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | |||||||| ||| ||||| | |||| || |||| |
Sbjct 2311064 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCTCCGGCGATCCGCTCGAAGA 2311123
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| |||||||||| ||||||||
Sbjct 2311124 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 2311183
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 2311184 GGACCTGCTTCAGCACCTTGTA 2311205
Score = 147 bits (162), Expect = 3e-29
Identities = 154/202 (76%), Gaps = 3/202 (1%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| |||||||||||| ||||||||||| || | ||
Sbjct 2441462 GCTTGGCCAGCTCCCCGGGCAG---CAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 2441518
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | |||||||| || || ||| | |||| || |||| |
Sbjct 2441519 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGTGACGCTTCGCCGGCGATCCGCTCGAAGA 2441578
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| |||||||||| ||||||||
Sbjct 2441579 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 2441638
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 2441639 GGACCTGCTTCAGCACCTTGTA 2441660
Score = 136 bits (150), Expect = 5e-26
Identities = 147/195 (75%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 1254350 CAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTT 1254409
||| || ||| ||| | ||||||||||| ||||||||||| || | ||| |||
Sbjct 2508519 CAGCTCCCCGGGCAGCAGTAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGA 2508460
Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469
|||||||| | ||||||| ||| |||||| | ||||||| |||| ||||||||
Sbjct 2508459 ACGCTTGTTGTAATGCGCCAAGCGGGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTT 2508400
Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529
||| || |||||||||| ||| | |||| ||| |||||| |||||||| |||||
Sbjct 2508399 GACGAAGGAGTTCATGATGCCCATAGCCTTGGAGGAAATGCCCGTATCGGGGTGGACCTG 2508340
Query 1254530 CTTGAGCACCTTGTA 1254544
||| |||||||||||
Sbjct 2508339 CTTCAGCACCTTGTA 2508325
>seq701
Length=45252
Score = 152 bits (168), Expect = 6e-31
Identities = 155/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||||||| ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 3380 GCTTGGCCAGTTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 3321
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | |||||||| ||| |||||| | |||| || |||| |
Sbjct 3320 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCGGCGATCCGCTCGAAGA 3261
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | ||| ||||||||| ||| ||||
Sbjct 3260 TGTCGTTGACGAAAGAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCAGTGTCAGGGT 3201
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 3200 GGACCTGCTTCAGCACCTTGTA 3179
Score = 152 bits (168), Expect = 6e-31
Identities = 155/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||||||| ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 23343 GCTTGGCCAGTTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 23402
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | |||||||| ||| |||||| | |||| || |||| |
Sbjct 23403 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCGGCGATCCGCTCGAAGA 23462
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | ||| ||||||||| ||| ||||
Sbjct 23463 TGTCGTTGACGAAAGAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCAGTGTCAGGGT 23522
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 23523 GGACCTGCTTCAGCACCTTGTA 23544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106982784714202
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