Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5 170 2e-36 seq168 158 1e-32 seq701 152 6e-31 >seq5 Length=36077823 Score = 170 bits (188), Expect = 2e-36 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 31707119 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 31707060 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 31707059 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 31707000 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 31706999 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 31706940 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||| ||||||| Sbjct 31706939 GGACCTGCTTCAGCACTTTGTAGA 31706916 Score = 165 bits (182), Expect = 1e-34 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| || | || Sbjct 31741373 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGAGAAGTGA 31741314 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| || | ||||| |||| | Sbjct 31741313 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCTGGCTATGCGCTCGAAGA 31741254 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 31741253 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 31741194 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 31741193 GGACCTGCTTCAGCACCTTGTAGA 31741170 Score = 154 bits (170), Expect = 2e-31 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCC-GCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCG 1254401 || ||||||| || || | ||| | |||||||||||| ||||||||||| || | | Sbjct 31739030 GCTTGGCCAGCTCCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTG 31739089 Query 1254402 ATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 || || ||||||||| |||||||||| ||| |||||| | ||||||| |||| Sbjct 31739090 ATGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAG 31739149 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 ||||||||||| || || ||||||| ||| | |||| |||||||||| ||||||| Sbjct 31739150 ATGTCGTTGACGAAGGAATTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGG 31739209 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGA 1254546 || |||||||| ||||| ||||||| Sbjct 31739210 TGGACCTGCTTCAGCACTTTGTAGA 31739234 Score = 143 bits (158), Expect = 3e-28 Identities = 156/204 (76%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| | ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 31720587 GCTTGGCCAG--CCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 31720644 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| |||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 31720645 TGGTGGAGCGTTTGT---AGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 31720701 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| ||| |||| Sbjct 31720702 TGTCGTTGACGAAGGAGTTCATGATGCCCATAGCCTTGGAGGAGATGCCCGTGTC-GGGT 31720760 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||| ||||||| Sbjct 31720761 GGACCTGCTTCAGCACTTTGTAGA 31720784 >seq168 Length=7028291 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 2258694 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 2258635 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | |||||||| ||| ||||| | |||| || |||| | Sbjct 2258634 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCTCCGGCGATCCGCTCGAAGA 2258575 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 2258574 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 2258515 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 2258514 GGACCTGCTTCAGCACCTTGTA 2258493 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 2297762 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 2297703 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | |||||||| ||| ||||| | |||| || |||| | Sbjct 2297702 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCTCCGGCGATCCGCTCGAAGA 2297643 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 2297642 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 2297583 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 2297582 GGACCTGCTTCAGCACCTTGTA 2297561 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 2311004 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 2311063 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | |||||||| ||| ||||| | |||| || |||| | Sbjct 2311064 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCTCCGGCGATCCGCTCGAAGA 2311123 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 2311124 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 2311183 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 2311184 GGACCTGCTTCAGCACCTTGTA 2311205 Score = 147 bits (162), Expect = 3e-29 Identities = 154/202 (76%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| |||||||||||| ||||||||||| || | || Sbjct 2441462 GCTTGGCCAGCTCCCCGGGCAG---CAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 2441518 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | |||||||| || || ||| | |||| || |||| | Sbjct 2441519 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGTGACGCTTCGCCGGCGATCCGCTCGAAGA 2441578 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 2441579 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 2441638 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 2441639 GGACCTGCTTCAGCACCTTGTA 2441660 Score = 136 bits (150), Expect = 5e-26 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1254350 CAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTT 1254409 ||| || ||| ||| | ||||||||||| ||||||||||| || | ||| ||| Sbjct 2508519 CAGCTCCCCGGGCAGCAGTAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGA 2508460 Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469 |||||||| | ||||||| ||| |||||| | ||||||| |||| |||||||| Sbjct 2508459 ACGCTTGTTGTAATGCGCCAAGCGGGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTT 2508400 Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529 ||| || |||||||||| ||| | |||| ||| |||||| |||||||| ||||| Sbjct 2508399 GACGAAGGAGTTCATGATGCCCATAGCCTTGGAGGAAATGCCCGTATCGGGGTGGACCTG 2508340 Query 1254530 CTTGAGCACCTTGTA 1254544 ||| ||||||||||| Sbjct 2508339 CTTCAGCACCTTGTA 2508325 >seq701 Length=45252 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 3380 GCTTGGCCAGTTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 3321 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | |||||||| ||| |||||| | |||| || |||| | Sbjct 3320 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCGGCGATCCGCTCGAAGA 3261 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| ||||||||| ||| |||| Sbjct 3260 TGTCGTTGACGAAAGAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCAGTGTCAGGGT 3201 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 3200 GGACCTGCTTCAGCACCTTGTA 3179 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 23343 GCTTGGCCAGTTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 23402 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | |||||||| ||| |||||| | |||| || |||| | Sbjct 23403 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCGGCGATCCGCTCGAAGA 23462 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| ||||||||| ||| |||| Sbjct 23463 TGTCGTTGACGAAAGAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCAGTGTCAGGGT 23522 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 23523 GGACCTGCTTCAGCACCTTGTA 23544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106982784714202