Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 224 2e-52 seq701 219 7e-51 seq168 215 8e-50 >seq5 Length=36077823 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 31707158 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 31707099 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| | Sbjct 31707098 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 31707039 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 31707038 GCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 31706979 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||||||||| |||||||| ||||| |||| Sbjct 31706978 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGGACCTGCTTCAGCACTTTGT 31706919 Query 1485710 AAAC 1485713 | || Sbjct 31706918 AGAC 31706915 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 31741412 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 31741353 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 31741352 GCAGCAGACGCACGGCCGTCTGGATCTCCCGAGAAGTGATGGTCGAGCGCTTGTTGTAGT 31741293 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| || | ||||| |||| ||||||||||| || ||||||| Sbjct 31741292 GCGCCAGGCGGGAAGCCTCGCTGGCTATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 31741233 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||||||||| |||||||| |||||||||| Sbjct 31741232 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 31741173 Query 1485710 AAAC 1485713 | || Sbjct 31741172 AGAC 31741169 Score = 208 bits (230), Expect = 1e-47 Identities = 194/245 (79%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCC-GCGC 1485528 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || || | || Sbjct 31738991 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCCGGGC 31739050 Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588 | | |||||||||||| ||||||||||| |||| ||| || ||||||||| | Sbjct 31739051 AGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAG 31739110 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||||||||| |||||| | ||||||| |||| ||||||||||| || || ||| Sbjct 31739111 TGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAATTC 31739170 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| |||||||||| ||||||||| |||||||| ||||| ||| Sbjct 31739171 ATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGGACCTGCTTCAGCACTTTG 31739230 Query 1485709 TAAAC 1485713 || || Sbjct 31739231 TAGAC 31739235 Score = 203 bits (224), Expect = 5e-46 Identities = 194/244 (80%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| | ||| ||| Sbjct 31720548 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAG--CCCCGGGCA 31720605 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||| |||| ||||| Sbjct 31720606 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGTTTGT-AGTGC 31720664 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || ||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 31720665 GC--CAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 31720722 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||| ||||| |||||||| ||||| |||| Sbjct 31720723 TGATGCCCATAGCCTTGGAGGAGATGCCCGTGTC-GGGTGGACCTGCTTCAGCACTTTGT 31720781 Query 1485710 AAAC 1485713 | || Sbjct 31720782 AGAC 31720785 >seq701 Length=45252 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||||||||| ||| ||| Sbjct 3419 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGTTCCCCGGGCA 3360 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| Sbjct 3359 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAAT 3300 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | |||| || |||| ||||||||||| || ||||||| Sbjct 3299 GCGCCAGGCGGGACGCCTCGCCGGCGATCCGCTCGAAGATGTCGTTGACGAAAGAGTTCA 3240 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 3239 TGATGCCCATGGCTTTGGAGGAGATGCCAGTGTCAGGGTGGACCTGCTTCAGCACCTTGT 3180 Query 1485710 AAAC 1485713 | || Sbjct 3179 ACAC 3176 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||||||||| ||| ||| Sbjct 23304 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGTTCCCCGGGCA 23363 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| Sbjct 23364 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAAT 23423 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | |||| || |||| ||||||||||| || ||||||| Sbjct 23424 GCGCCAGGCGGGACGCCTCGCCGGCGATCCGCTCGAAGATGTCGTTGACGAAAGAGTTCA 23483 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 23484 TGATGCCCATGGCTTTGGAGGAGATGCCAGTGTCAGGGTGGACCTGCTTCAGCACCTTGT 23543 Query 1485710 AAAC 1485713 | || Sbjct 23544 ACAC 23547 >seq168 Length=7028291 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 2258733 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 2258674 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| Sbjct 2258673 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAAT 2258614 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | |||| || |||| ||||||||||| || ||||||| Sbjct 2258613 GCGCCAGGCGGGACGCCTCTCCGGCGATCCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 2258554 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||||||||| |||||||| |||||||||| Sbjct 2258553 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 2258494 Query 1485710 AAAC 1485713 | || Sbjct 2258493 ACAC 2258490 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 2297801 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 2297742 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| Sbjct 2297741 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAAT 2297682 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | |||| || |||| ||||||||||| || ||||||| Sbjct 2297681 GCGCCAGGCGGGACGCCTCTCCGGCGATCCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 2297622 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||||||||| |||||||| |||||||||| Sbjct 2297621 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 2297562 Query 1485710 AAAC 1485713 | || Sbjct 2297561 ACAC 2297558 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 2310965 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 2311024 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| Sbjct 2311025 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAAT 2311084 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | |||| || |||| ||||||||||| || ||||||| Sbjct 2311085 GCGCCAGGCGGGACGCCTCTCCGGCGATCCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 2311144 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||||||||| |||||||| |||||||||| Sbjct 2311145 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 2311204 Query 1485710 AAAC 1485713 | || Sbjct 2311205 ACAC 2311208 Score = 208 bits (230), Expect = 1e-47 Identities = 193/244 (79%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||||||||| || ||||||||| ||||||| || ||| ||| Sbjct 2441423 TGTACTTGGTGACGGCCTTGGTACCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 2441482 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||||||||| ||||||||||| |||| ||| ||| ||||||||| Sbjct 2441483 G---CAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAAT 2441539 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| || ||| | |||| || |||| ||||||||||| || ||||||| Sbjct 2441540 GCGCCAGGCGTGACGCTTCGCCGGCGATCCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 2441599 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||||||||| |||||||| |||||||||| Sbjct 2441600 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 2441659 Query 1485710 AAAC 1485713 | || Sbjct 2441660 ACAC 2441663 Score = 194 bits (214), Expect = 3e-43 Identities = 190/244 (78%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||||||||| || ||||||||| |||| || || ||| ||| Sbjct 2508564 TGTATTTGGTGACGGCCTTGGTACCCTCGGACACGGCGTGCTTGGC-AGCTCCCCGGGCA 2508506 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| ||||||||||| |||| ||| ||| |||||||| Sbjct 2508505 GCAGTAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAACGCTTGTTGTAAT 2508446 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| |||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 2508445 GCGCCAAGCGGGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 2508386 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||| |||||| |||||||| |||||||| |||||||||| Sbjct 2508385 TGATGCCCATAGCCTTGGAGGAAATGCCCGTATCGGGGTGGACCTGCTTCAGCACCTTGT 2508326 Query 1485710 AAAC 1485713 | || Sbjct 2508325 ACAC 2508322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916043650086734