Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq37 111 2e-19 seq26 111 2e-19 seq332 102 1e-16 seq4 91.5 2e-13 seq73 89.7 8e-13 seq140 87.8 3e-12 seq23 87.8 3e-12 seq46 84.2 3e-11 >seq37 Length=18181243 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||||| || || || ||||| || || ||||| |||| || |||| | Sbjct 5582607 TGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTGTCTG 5582666 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| || || |||||| ||| ||||| ||||| || ||||||| Sbjct 5582667 ATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAAC 5582726 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || || ||| | || ||| | |||| || | || || || | Sbjct 5582727 AAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAACA 5582786 Query 146212 TACAAAAAGAATCGAC 146227 | || || || || || Sbjct 5582787 TTCAGAAGGAGTCTAC 5582802 >seq26 Length=21800395 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || || || || || || | |||| |||||||| | Sbjct 5591893 TGCAGATTTTCTTGAAGACTTTGACGGGGAAGACCATCATGCTTGAGGTAGAACAGTCTG 5591834 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| || || |||||| ||| ||||| ||||| || ||||||| Sbjct 5591833 ATACTATTGAAAATGTCAAGGTCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAAC 5591774 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||||||||| || ||| | || ||| | |||| || || || || || | Sbjct 5591773 AAAGATTGATTTTTGCAGGCAAGCAACTGGAAGATGGTTGAACTTTGACTGACTACAACA 5591714 Query 146212 TACAAAAAGAATCGAC 146227 | || || || || || Sbjct 5591713 TTCAGAAGGAGTCTAC 5591698 >seq332 Length=1927111 Score = 102 bits (112), Expect = 1e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||||| || || || | || || || || ||| |||| || |||| || Sbjct 1859927 TGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACTCTTGAGGTTGAACCATCCG 1859868 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| || | || |||||| ||| ||||||||||| | ||||||| Sbjct 1859867 ATACTATTGAAAATGTCAAGACCAAGATACAAAATAAGGAAGGCATTCCCTCTGATCAAC 1859808 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| ||||||||||| || || | || ||| || || | || || |||| Sbjct 1859807 AAAGATGGATTTTTGCAGGCAAGCAGCTGGAAGATGGACATACTTTGTCTGACTACAATA 1859748 Query 146212 TACAAAAAGAATCGAC 146227 | || ||||| || || Sbjct 1859747 TTCAGAAAGAGTCTAC 1859732 >seq4 Length=36543856 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || |||| || || | | |||| || |||| | Sbjct 27117862 TGCAGATTTTCGTGAAGACTTTCACAGAGAAGACCACCATGCTTGAGGTTGAACCATCTG 27117921 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || || |||||| ||| ||||| ||||| || ||||||| Sbjct 27117922 ATACCATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGAATTCCCCCTGATCAAC 27117981 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || || ||| | || ||| | |||| || | || || || | Sbjct 27117982 AAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAACA 27118041 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || || ||||| || ||||| Sbjct 27118042 TTCAGAAGGAATCTACCCTCCAT 27118064 >seq73 Length=13007589 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| |||||| || || |||||| ||||||||| ||||| || |||||| Sbjct 8615692 GATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAAGAAGGTATTCCCCCTGATCAA 8615633 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | |||||||| || || ||| | || ||| | |||| || | || || || Sbjct 8615632 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 8615573 Query 146211 ATACAAAAAGAATCGAC 146227 || || || ||||| || Sbjct 8615572 ATTCAGAAGGAATCTAC 8615556 >seq140 Length=8386802 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||||| || || || | || || || || || |||| || |||| | Sbjct 635476 TGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACGCTTGAGGTCGAACCGTCTG 635417 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||||| || || |||||| ||| ||||| ||||| || ||||||| Sbjct 635416 ATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAAC 635357 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||||| || || ||| | || || | |||| || | || || || | Sbjct 635356 AAAGATTGATTTTTGTGGGCAAGCAACTGGAAAATGGTTGAACTTTGTCTGACTACAACA 635297 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 635296 TTCAGAAGGAATCTAC 635281 >seq23 Length=22081990 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || ||||| || || || || |||| || |||| | Sbjct 21845319 TGCAGATTTTTGTGAAGACTTTGACAGGGAAGACCATCACCCTTGAGGTCGAACCATCCA 21845260 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| || || |||||| ||| |||| ||||| || ||||||| Sbjct 21845259 ATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGAAAGGTATTCCCCCTGATCAAC 21845200 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| | || ||||| | ||| |||| || | || ||||| | Sbjct 21845199 AAAGATTGATTTTTGCGGACAAGCAATTGAAAGATGGATGAACTTTGTCTGACTATAACA 21845140 Query 146212 TACAAAAAGAATCGAC 146227 | || || || || || Sbjct 21845139 TTCAGAAGGAGTCTAC 21845124 >seq46 Length=16939101 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || || || || || || ||| |||| || |||| | Sbjct 5708281 TGCAGATTTTCGTGAAGACTTTGACCGGGAAGACCATCACTCTTGAGGTCGAACCATCTG 5708340 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||| | ||||||| || || ||||| ||| || || | ||| || ||||||| Sbjct 5708341 ACACTACTGAAAATGTCAAGGCCAAGGTACAAGATAAGGATGGTACTCCCCCTGATCAAC 5708400 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||||||||| || ||| | || ||| | |||| || | || || || | Sbjct 5708401 AAAGATTGATTTTTGCAGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAACA 5708460 Query 146212 TACAAAAAGAATCGAC 146227 | || || || || || Sbjct 5708461 TTCAGAAGGAGTCTAC 5708476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786147669585520