Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq37 111 2e-19
seq26 111 2e-19
seq332 102 1e-16
seq4 91.5 2e-13
seq73 89.7 8e-13
seq140 87.8 3e-12
seq23 87.8 3e-12
seq46 84.2 3e-11
>seq37
Length=18181243
Score = 111 bits (122), Expect = 2e-19
Identities = 142/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||||| || || || ||||| || || ||||| |||| || |||| |
Sbjct 5582607 TGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTGTCTG 5582666
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| ||||||| || || |||||| ||| ||||| ||||| || |||||||
Sbjct 5582667 ATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAAC 5582726
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | |||||||| || || ||| | || ||| | |||| || | || || || |
Sbjct 5582727 AAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAACA 5582786
Query 146212 TACAAAAAGAATCGAC 146227
| || || || || ||
Sbjct 5582787 TTCAGAAGGAGTCTAC 5582802
>seq26
Length=21800395
Score = 111 bits (122), Expect = 2e-19
Identities = 142/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || || || || || || || || | |||| |||||||| |
Sbjct 5591893 TGCAGATTTTCTTGAAGACTTTGACGGGGAAGACCATCATGCTTGAGGTAGAACAGTCTG 5591834
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| ||||||| || || |||||| ||| ||||| ||||| || |||||||
Sbjct 5591833 ATACTATTGAAAATGTCAAGGTCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAAC 5591774
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | ||||||||||| || ||| | || ||| | |||| || || || || || |
Sbjct 5591773 AAAGATTGATTTTTGCAGGCAAGCAACTGGAAGATGGTTGAACTTTGACTGACTACAACA 5591714
Query 146212 TACAAAAAGAATCGAC 146227
| || || || || ||
Sbjct 5591713 TTCAGAAGGAGTCTAC 5591698
>seq332
Length=1927111
Score = 102 bits (112), Expect = 1e-16
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||||| || || || | || || || || ||| |||| || |||| ||
Sbjct 1859927 TGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACTCTTGAGGTTGAACCATCCG 1859868
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| ||||||| || | || |||||| ||| ||||||||||| | |||||||
Sbjct 1859867 ATACTATTGAAAATGTCAAGACCAAGATACAAAATAAGGAAGGCATTCCCTCTGATCAAC 1859808
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| ||||||||||| || || | || ||| || || | || || ||||
Sbjct 1859807 AAAGATGGATTTTTGCAGGCAAGCAGCTGGAAGATGGACATACTTTGTCTGACTACAATA 1859748
Query 146212 TACAAAAAGAATCGAC 146227
| || ||||| || ||
Sbjct 1859747 TTCAGAAAGAGTCTAC 1859732
>seq4
Length=36543856
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || || || |||| || || | | |||| || |||| |
Sbjct 27117862 TGCAGATTTTCGTGAAGACTTTCACAGAGAAGACCACCATGCTTGAGGTTGAACCATCTG 27117921
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||| || || |||||| ||| ||||| ||||| || |||||||
Sbjct 27117922 ATACCATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGAATTCCCCCTGATCAAC 27117981
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | |||||||| || || ||| | || ||| | |||| || | || || || |
Sbjct 27117982 AAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAACA 27118041
Query 146212 TACAAAAAGAATCGACTATCCAT 146234
| || || ||||| || |||||
Sbjct 27118042 TTCAGAAGGAATCTACCCTCCAT 27118064
>seq73
Length=13007589
Score = 89.7 bits (98), Expect = 8e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||||||| |||||| || || |||||| ||||||||| ||||| || ||||||
Sbjct 8615692 GATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAAGAAGGTATTCCCCCTGATCAA 8615633
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
|||||| | |||||||| || || ||| | || ||| | |||| || | || || ||
Sbjct 8615632 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 8615573
Query 146211 ATACAAAAAGAATCGAC 146227
|| || || ||||| ||
Sbjct 8615572 ATTCAGAAGGAATCTAC 8615556
>seq140
Length=8386802
Score = 87.8 bits (96), Expect = 3e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||||| || || || | || || || || || |||| || |||| |
Sbjct 635476 TGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACGCTTGAGGTCGAACCGTCTG 635417
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| |||||| || || |||||| ||| ||||| ||||| || |||||||
Sbjct 635416 ATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAAC 635357
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | ||||||| || || ||| | || || | |||| || | || || || |
Sbjct 635356 AAAGATTGATTTTTGTGGGCAAGCAACTGGAAAATGGTTGAACTTTGTCTGACTACAACA 635297
Query 146212 TACAAAAAGAATCGAC 146227
| || || ||||| ||
Sbjct 635296 TTCAGAAGGAATCTAC 635281
>seq23
Length=22081990
Score = 87.8 bits (96), Expect = 3e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | || || || ||||| || || || || |||| || |||| |
Sbjct 21845319 TGCAGATTTTTGTGAAGACTTTGACAGGGAAGACCATCACCCTTGAGGTCGAACCATCCA 21845260
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| ||||||| || || |||||| ||| |||| ||||| || |||||||
Sbjct 21845259 ATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGAAAGGTATTCCCCCTGATCAAC 21845200
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | |||||||| | || ||||| | ||| |||| || | || ||||| |
Sbjct 21845199 AAAGATTGATTTTTGCGGACAAGCAATTGAAAGATGGATGAACTTTGTCTGACTATAACA 21845140
Query 146212 TACAAAAAGAATCGAC 146227
| || || || || ||
Sbjct 21845139 TTCAGAAGGAGTCTAC 21845124
>seq46
Length=16939101
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || || || || || || || || ||| |||| || |||| |
Sbjct 5708281 TGCAGATTTTCGTGAAGACTTTGACCGGGAAGACCATCACTCTTGAGGTCGAACCATCTG 5708340
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||| | ||||||| || || ||||| ||| || || | ||| || |||||||
Sbjct 5708341 ACACTACTGAAAATGTCAAGGCCAAGGTACAAGATAAGGATGGTACTCCCCCTGATCAAC 5708400
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | ||||||||||| || ||| | || ||| | |||| || | || || || |
Sbjct 5708401 AAAGATTGATTTTTGCAGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAACA 5708460
Query 146212 TACAAAAAGAATCGAC 146227
| || || || || ||
Sbjct 5708461 TTCAGAAGGAGTCTAC 5708476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786147669585520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |