Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq222 84.2 2e-11 seq48 82.4 7e-11 >seq222 Length=4825589 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/233 (70%), Gaps = 11/233 (5%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 |||||||| ||||| |||||||| | ||||| ||||| ||||| | ||| | ||| Sbjct 4321052 TTTATGTACTATGTAAATGATGGAATGTATGGATCATTTAATTGCATTCTGTTTGATCAT 4321111 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAAAGAA----AAACGCCTTGAAGACAAAG-ACTATG 21119 || | | || |||| |||| ||||| |||| || || |||| | ||| Sbjct 4321112 GCACATATTAAATCTATTCTGCA-AAAGAGTCCCAAACCA---GATGAGAAAGTATTATT 4321167 Query 21120 TTTCTAGCATTTGGGGGCCTAGCTGCGAT-GGCTTAGATTGCATTGTTAAGCGGTGTGAA 21178 |||||| || ||||| || | || || |||||| |||| |||||| | | |||| Sbjct 4321168 TTTCTATTATATGGGGACCAACATGTTATTGGCTTA-ATTGAATTGTTGAATGTTGTGGT 4321226 Query 21179 CTGCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTA 21231 | ||| | |||| ||||| || ||| | | |||||||||||||| ||||| Sbjct 4321227 TTACCATAAATTCATGTGGGAGATTGGATGCTGTTTGAAAACATGGGTGCTTA 4321279 >seq48 Length=16487017 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 20372 GAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCT 20431 || || || ||| | |||| ||| || || | |||| |||||| | | ||| ||||| Sbjct 8534256 GAAATACAATTAGTACAAAGTCTTGGGGTACCTCCAGAAAGGATAATATATGCAAATCCA 8534197 Query 20432 TGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTT 20491 || || ||| || || || | |||||| || | | ||||||| ||||||||||| Sbjct 8534196 TGCAAACAGGTGTCACAAATTAAGTATGCTGCCAACAATGGAGTACAAATGATGACTTTT 8534137 Query 20492 GATAGTGAAGAAGAGCTTACCAAAATTG 20519 |||||||||| |||||| | ||| ||| Sbjct 8534136 GATAGTGAAGTAGAGCTAATGAAAGTTG 8534109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463534556026080