Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq274 105 1e-17 seq45 86.0 1e-11 >seq274 Length=3334443 Score = 105 bits (116), Expect = 1e-17 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| |||| | |||||||||| | | || ||||| | || || || |||||||| Sbjct 2950129 GATAGCTGGAGCTCTGTGGTGGTACTTTGTGTCAAAAGGAGTTGAGTATTTGGATACAGT 2950070 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTC-TACACGTATATCATCATT 58487 ||| ||||| || ||||| || || || || | ||||| | || || |||||||| | Sbjct 2950069 GTTCTTCATCCTGAGGAAGAAAAACAACCAAGT-ATCTTTCCTTCATGTGTATCATCACT 2950011 Query 58488 TTACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 |||||||||||| || | ||| | || ||||| ||| | |||||||| || Sbjct 2950010 GTACTATGTTTACATTGTGGTGGATCGGCATTAAGTGGGTGGCAGGAGGACA 2949959 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 ||||||||||| |||||| | |||||||| |||||||| ||||||||| |||||||| Sbjct 2947029 GCATTTTTCGGAGCTCAGCTTAATTCTTTCATCCATGTGATTATGTATTCATATTATGGC 2946970 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | | || | ||| | | || | || ||||| ||||||||||| ||| | || ||| Sbjct 2946969 TTAACTGCATTTGGCCCATGGATTCAGAAATATTTGTGGTGGAAGCGATACTTGACCATA 2946910 Query 58661 ATGCAATTGGTA 58672 | || ||||| Sbjct 2946909 TTACAGCTGGTA 2946898 >seq45 Length=17031729 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTA-------- 81695 || ||| |||||||||| |||| || ||||| | ||||| || ||||| | Sbjct 11225707 AGGGTAGATTCCTTCTGAATATCGTAGTCAGACAAAGTTCGACCATCTTCCAGTGTCTTG 11225648 Query 81696 ---ACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||| || | |||||||||| | || | || |||||||||||||| ||||| || Sbjct 11225647 CCCACAAAAATCAATCTTTGTTGATCAGGGGGAATATCTTCCTTATCTTGTATCTTGGCC 11225588 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 11225587 TTGACATTTTCAATAGTAT 11225569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903389676228160