Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq274 105 1e-17
seq45 86.0 1e-11
>seq274
Length=3334443
Score = 105 bits (116), Expect = 1e-17
Identities = 128/172 (74%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428
|||||| |||| | |||||||||| | | || ||||| | || || || ||||||||
Sbjct 2950129 GATAGCTGGAGCTCTGTGGTGGTACTTTGTGTCAAAAGGAGTTGAGTATTTGGATACAGT 2950070
Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTC-TACACGTATATCATCATT 58487
||| ||||| || ||||| || || || || | ||||| | || || |||||||| |
Sbjct 2950069 GTTCTTCATCCTGAGGAAGAAAAACAACCAAGT-ATCTTTCCTTCATGTGTATCATCACT 2950011
Query 58488 TTACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539
|||||||||||| || | ||| | || ||||| ||| | |||||||| ||
Sbjct 2950010 GTACTATGTTTACATTGTGGTGGATCGGCATTAAGTGGGTGGCAGGAGGACA 2949959
Score = 89.7 bits (98), Expect = 9e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600
||||||||||| |||||| | |||||||| |||||||| ||||||||| ||||||||
Sbjct 2947029 GCATTTTTCGGAGCTCAGCTTAATTCTTTCATCCATGTGATTATGTATTCATATTATGGC 2946970
Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660
| | || | ||| | | || | || ||||| ||||||||||| ||| | || |||
Sbjct 2946969 TTAACTGCATTTGGCCCATGGATTCAGAAATATTTGTGGTGGAAGCGATACTTGACCATA 2946910
Query 58661 ATGCAATTGGTA 58672
| || |||||
Sbjct 2946909 TTACAGCTGGTA 2946898
>seq45
Length=17031729
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/139 (73%), Gaps = 11/139 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTA-------- 81695
|| ||| |||||||||| |||| || ||||| | ||||| || ||||| |
Sbjct 11225707 AGGGTAGATTCCTTCTGAATATCGTAGTCAGACAAAGTTCGACCATCTTCCAGTGTCTTG 11225648
Query 81696 ---ACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
||||| || | |||||||||| | || | || |||||||||||||| ||||| ||
Sbjct 11225647 CCCACAAAAATCAATCTTTGTTGATCAGGGGGAATATCTTCCTTATCTTGTATCTTGGCC 11225588
Query 81753 TTTATATTTTCAATCGTAT 81771
|| | ||||||||| ||||
Sbjct 11225587 TTGACATTTTCAATAGTAT 11225569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903389676228160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |