Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq60 165 9e-36
seq73 145 9e-30
>seq60
Length=14251744
Score = 165 bits (182), Expect = 9e-36
Identities = 595/922 (65%), Gaps = 13/922 (1%)
Strand=Plus/Plus
Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126
||||||| |||| || |||| ||||||||| || || ||| || ||| ||
Sbjct 4497513 TTATGTCTCAGATGTTCCTCTAAACACTGGACTGCAAAAGAGTCAACATCAATATCAAAT 4497572
Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186
||||| || || | || || ||| | | ||||| || | ||| || || ||
Sbjct 4497573 TTGTTGGCAAATAAATGGGGCT-GTTGT--AGCATCCAGTTTAAATCTCCTACCCCAAAT 4497629
Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246
|| || || || || || || | || || || || ||||| | || || | | |
Sbjct 4497630 ACACATACAGAACGGACATGAATCCCACTACATGGTGGATATGGAGCTCCCTTGAAAATG 4497689
Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306
|| || || ||||||||||||| || ||||||| || || ||||||| || | ||
Sbjct 4497690 TCTCCTTCCAAGTATTGCCACTTGACAAACCTAGCAATTGCACGCATGTCAGAAATATCA 4497749
Query 162307 TACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365
||||| | ||| || | | || || ||||| | || ||||| || | || |||||
Sbjct 4497750 TACTTAT-TACTGGAAGAAAGTGCACCCGGAACTTCAGGGAGTCTTTGAATTGTGGCCCA 4497808
Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425
|| | ||| ||||| || || || || || | |||||| || || | | || | |
Sbjct 4497809 CAAATATTCATCTGGGCTGTATGTATCTTTAGCCCACTCAATAAATTTCAGGATCTTCCC 4497868
Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485
|| | ||| | || || || ||| || | |||||| || || || |||||
Sbjct 4497869 ATTGGTTAGCACATACTCTACATACTTCCTACCAACCACAAAGTAGGCACTGCCTGAAAA 4497928
Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545
| ||| | |||||||| | || |||| || ||||| || | |||||
Sbjct 4497929 AATTGGTGTTTCAATAGGAGGAAGTGACTTATCTTTTCCTGTGTTTTTTAGATTGCCCTC 4497988
Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605
| ||| | | |||| ||||||| | |||| | || | | || || ||
Sbjct 4497989 AATGACTTCATAATGCTTCTTCCACCTTACTTCCTTATGGAAAGGCATTTTCTCAGTTTC 4498048
Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665
|| ||||| | | | || | ||| |||| | | ||| || ||||| || ||||
Sbjct 4498049 TAAGCTGTTTCCATTCATTAAAGACTTTAGCTTCCTTATCATTTCCAGATTAGTTTTAAT 4498108
Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCA--CTTAACGCTGAGTCCGTAC 162723
|| || || | || || ||||| || | ||| ||||| || ||| || ||| |||
Sbjct 4498109 AGGGAAATCCATACCACAAAGATTTATCAAATACTTCCATTCTGAACTCT--GTCTGTAG 4498166
Query 162724 AGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTC 162783
||||| | ||||| || || || ||||| | |||||| || || ||||| || |||
Sbjct 4498167 AGATCTCTCATGCAGTTGAGGTCCGCTTGGACCCTACTCCATGATGCATACACCACTCTC 4498226
Query 162784 TCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGT 162843
||||| | |||| | ||||| || | |||||| || | || ||| |||| ||| |
Sbjct 4498227 TCCAATTGACTGGCAATGAAGACGTTATTGAAACAAGATGCAATGCCCTTCACTGCCGCT 4498286
Query 162844 GAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGT 162901
| || || || | ||| | || || || | ||| || ||||||||| | ||
Sbjct 4498287 AAAAAGGATTCAGG--AGATTTTTTGTCAACATGAATGCAATAATAATTCTGAGGTGTGT 4498344
Query 162902 AGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACG 162961
|||||| || || | || || | ||| || || || || | ||||| || ||||| |
Sbjct 4498345 AGATGGTTCTTAGGAGCCTATCAAGCATTTCAATTTTGTGATAAACCACTATTGAATATG 4498404
Query 162962 CTATGGGGAACTCAGCCTCCTC 162983
| ||||| || || ||||||||
Sbjct 4498405 CAATGGGAAATTCTGCCTCCTC 4498426
>seq73
Length=13007589
Score = 145 bits (160), Expect = 9e-30
Identities = 413/628 (66%), Gaps = 9/628 (1%)
Strand=Plus/Plus
Query 176965 TGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCG 177024
|||| || | ||| ||||| || | ||| ||||||| |||| || || || || || |
Sbjct 10701037 TGTAATCTTCCACATGAATAAAGGAGTCCCCCGGGATAAAATTCTCATAGTTTTCCCTAG 10701096
Query 177025 ATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAA 177084
||| || || || | ||||| | ||| |||| || || |||||||||||| || |
Sbjct 10701097 ATGGACCTAGCACAACAGGTACTGTACCAGCCAGAAAAGCATTGTAGAGTTTTTCAGTGA 10701156
Query 177085 TATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATAGTAGCG 177144
|||| || |||| | ||||| ||||| | ||||| |||||||| | ||||| | | |
Sbjct 10701157 TATAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATTTACAAGTAGATA-TGGTG 10701215
Query 177145 GG-ATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCT 177203
|| || || | ||| | ||| ||||| | | | | || || ||| || ||
Sbjct 10701216 GGAATCAAACTTTTATCATTCACATATTCTCCAAATGCTTGTCCATAGGTATGAATTTCA 10701275
Query 177204 ATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCT 177262
||| |||||| | ||| ||| || || || ||| | || || ||||| || ||
Sbjct 10701276 ATGCTTTTACTCAACTCGCTGTAATA-CTTGACTCTTGCATGCTCAGGATTCCAGTTACT 10701334
Query 177263 GACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATACTAATGCAGTGTC 177322
||| |||||||| || | || |||| || || ||| | || | ||| |
Sbjct 10701335 GACAACCCAGCACACCAGTTTCTTCTTGCTTGGCAC----TTCAAACAAAAAGGAGTTTG 10701390
Query 177323 T-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACG 177381
| || | || | | || || ||||| || ||||| ||||| || | || || | |
Sbjct 10701391 TGCTTACTGTCATGAAGCCGTAAGGCACTTGTATATCTGAGTCACGGCGATAAGTCAGAG 10701450
Query 177382 TGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGT 177441
| |||||||| |||| ||| || || || ||| ||| | |||||||| ||||
Sbjct 10701451 TTAGATTGAAGAGGTGTTCAATGCCGCTCTTCTGGGGTGTGTGGGTAGGCGATTCCAAGT 10701510
Query 177442 TCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTA 177501
||||||| ||||| || || || | || || | || | |||| | || ||||
Sbjct 10701511 TCATCCAAATCCATTTCTGGAATGGCGGCCTAGCTTGCTGGGGTAAATTAGTGAGATCCC 10701570
Query 177502 TACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATAAACAGATCTGTCTA 177561
||| || |||| ||||||| | || |||| || ||||| |||| | || ||
Sbjct 10701571 AACTGATGTCTCGATGGTGAATCAGAACAGCATGGGATTTGTTGTAAAGGGCTCGATCGG 10701630
Query 177562 CGGTAACGTGACACGCACGTATGTTAAA 177589
||||| ||||| | | ||||||||
Sbjct 10701631 TGGTAAGACGACACCCGTGGATGTTAAA 10701658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578418218857600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |