Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq60 165 9e-36 seq73 145 9e-30 >seq60 Length=14251744 Score = 165 bits (182), Expect = 9e-36 Identities = 595/922 (65%), Gaps = 13/922 (1%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||||| |||| || |||| ||||||||| || || ||| || ||| || Sbjct 4497513 TTATGTCTCAGATGTTCCTCTAAACACTGGACTGCAAAAGAGTCAACATCAATATCAAAT 4497572 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 ||||| || || | || || ||| | | ||||| || | ||| || || || Sbjct 4497573 TTGTTGGCAAATAAATGGGGCT-GTTGT--AGCATCCAGTTTAAATCTCCTACCCCAAAT 4497629 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 || || || || || || || | || || || || ||||| | || || | | | Sbjct 4497630 ACACATACAGAACGGACATGAATCCCACTACATGGTGGATATGGAGCTCCCTTGAAAATG 4497689 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || || || ||||||||||||| || ||||||| || || ||||||| || | || Sbjct 4497690 TCTCCTTCCAAGTATTGCCACTTGACAAACCTAGCAATTGCACGCATGTCAGAAATATCA 4497749 Query 162307 TACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| || | | || || ||||| | || ||||| || | || ||||| Sbjct 4497750 TACTTAT-TACTGGAAGAAAGTGCACCCGGAACTTCAGGGAGTCTTTGAATTGTGGCCCA 4497808 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | ||| ||||| || || || || || | |||||| || || | | || | | Sbjct 4497809 CAAATATTCATCTGGGCTGTATGTATCTTTAGCCCACTCAATAAATTTCAGGATCTTCCC 4497868 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| || | |||||| || || || ||||| Sbjct 4497869 ATTGGTTAGCACATACTCTACATACTTCCTACCAACCACAAAGTAGGCACTGCCTGAAAA 4497928 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | |||||||| | || |||| || ||||| || | ||||| Sbjct 4497929 AATTGGTGTTTCAATAGGAGGAAGTGACTTATCTTTTCCTGTGTTTTTTAGATTGCCCTC 4497988 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605 | ||| | | |||| ||||||| | |||| | || | | || || || Sbjct 4497989 AATGACTTCATAATGCTTCTTCCACCTTACTTCCTTATGGAAAGGCATTTTCTCAGTTTC 4498048 Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665 || ||||| | | | || | ||| |||| | | ||| || ||||| || |||| Sbjct 4498049 TAAGCTGTTTCCATTCATTAAAGACTTTAGCTTCCTTATCATTTCCAGATTAGTTTTAAT 4498108 Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCA--CTTAACGCTGAGTCCGTAC 162723 || || || | || || ||||| || | ||| ||||| || ||| || ||| ||| Sbjct 4498109 AGGGAAATCCATACCACAAAGATTTATCAAATACTTCCATTCTGAACTCT--GTCTGTAG 4498166 Query 162724 AGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTC 162783 ||||| | ||||| || || || ||||| | |||||| || || ||||| || ||| Sbjct 4498167 AGATCTCTCATGCAGTTGAGGTCCGCTTGGACCCTACTCCATGATGCATACACCACTCTC 4498226 Query 162784 TCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGT 162843 ||||| | |||| | ||||| || | |||||| || | || ||| |||| ||| | Sbjct 4498227 TCCAATTGACTGGCAATGAAGACGTTATTGAAACAAGATGCAATGCCCTTCACTGCCGCT 4498286 Query 162844 GAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGT 162901 | || || || | ||| | || || || | ||| || ||||||||| | || Sbjct 4498287 AAAAAGGATTCAGG--AGATTTTTTGTCAACATGAATGCAATAATAATTCTGAGGTGTGT 4498344 Query 162902 AGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACG 162961 |||||| || || | || || | ||| || || || || | ||||| || ||||| | Sbjct 4498345 AGATGGTTCTTAGGAGCCTATCAAGCATTTCAATTTTGTGATAAACCACTATTGAATATG 4498404 Query 162962 CTATGGGGAACTCAGCCTCCTC 162983 | ||||| || || |||||||| Sbjct 4498405 CAATGGGAAATTCTGCCTCCTC 4498426 >seq73 Length=13007589 Score = 145 bits (160), Expect = 9e-30 Identities = 413/628 (66%), Gaps = 9/628 (1%) Strand=Plus/Plus Query 176965 TGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCG 177024 |||| || | ||| ||||| || | ||| ||||||| |||| || || || || || | Sbjct 10701037 TGTAATCTTCCACATGAATAAAGGAGTCCCCCGGGATAAAATTCTCATAGTTTTCCCTAG 10701096 Query 177025 ATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAA 177084 ||| || || || | ||||| | ||| |||| || || |||||||||||| || | Sbjct 10701097 ATGGACCTAGCACAACAGGTACTGTACCAGCCAGAAAAGCATTGTAGAGTTTTTCAGTGA 10701156 Query 177085 TATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATAGTAGCG 177144 |||| || |||| | ||||| ||||| | ||||| |||||||| | ||||| | | | Sbjct 10701157 TATAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATTTACAAGTAGATA-TGGTG 10701215 Query 177145 GG-ATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCT 177203 || || || | ||| | ||| ||||| | | | | || || ||| || || Sbjct 10701216 GGAATCAAACTTTTATCATTCACATATTCTCCAAATGCTTGTCCATAGGTATGAATTTCA 10701275 Query 177204 ATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCT 177262 ||| |||||| | ||| ||| || || || ||| | || || ||||| || || Sbjct 10701276 ATGCTTTTACTCAACTCGCTGTAATA-CTTGACTCTTGCATGCTCAGGATTCCAGTTACT 10701334 Query 177263 GACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATACTAATGCAGTGTC 177322 ||| |||||||| || | || |||| || || ||| | || | ||| | Sbjct 10701335 GACAACCCAGCACACCAGTTTCTTCTTGCTTGGCAC----TTCAAACAAAAAGGAGTTTG 10701390 Query 177323 T-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACG 177381 | || | || | | || || ||||| || ||||| ||||| || | || || | | Sbjct 10701391 TGCTTACTGTCATGAAGCCGTAAGGCACTTGTATATCTGAGTCACGGCGATAAGTCAGAG 10701450 Query 177382 TGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGT 177441 | |||||||| |||| ||| || || || ||| ||| | |||||||| |||| Sbjct 10701451 TTAGATTGAAGAGGTGTTCAATGCCGCTCTTCTGGGGTGTGTGGGTAGGCGATTCCAAGT 10701510 Query 177442 TCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTA 177501 ||||||| ||||| || || || | || || | || | |||| | || |||| Sbjct 10701511 TCATCCAAATCCATTTCTGGAATGGCGGCCTAGCTTGCTGGGGTAAATTAGTGAGATCCC 10701570 Query 177502 TACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATAAACAGATCTGTCTA 177561 ||| || |||| ||||||| | || |||| || ||||| |||| | || || Sbjct 10701571 AACTGATGTCTCGATGGTGAATCAGAACAGCATGGGATTTGTTGTAAAGGGCTCGATCGG 10701630 Query 177562 CGGTAACGTGACACGCACGTATGTTAAA 177589 ||||| ||||| | | |||||||| Sbjct 10701631 TGGTAAGACGACACCCGTGGATGTTAAA 10701658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578418218857600