Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq103 122 6e-23
seq85 118 7e-22
seq365 89.7 3e-13
>seq103
Length=10584223
Score = 122 bits (134), Expect = 6e-23
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | ||||| || || ||| |||||| || |||||||| || ||
Sbjct 9900367 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900308
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || || |||||||| ||||| | |||||| ||| | ||
Sbjct 9900307 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9900248
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| || || || | |||| || | |||||| || | || ||
Sbjct 9900247 ATGCCTTCTTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 9900189
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
|| | ||||| || || || ||||| || || |||||||||||||| ||
Sbjct 9900188 TTCCAGGGTGATGGTCTTGCCAGTTAAGGTCTTCACAAAGATCTGCATTGT 9900138
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | |||||||| || ||| |||||| || |||||||| || ||
Sbjct 9900822 CCACCTCTGAGACGAAGGACCAAATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900763
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || || |||||||| ||||| | |||||| ||| | ||
Sbjct 9900762 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 9900703
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| || ||| | | |||| || | |||||| || | || ||
Sbjct 9900702 ATGCCTTCTTTGTCTTGGATCTTC-GCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 9900644
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || || || || || |||||||||||
Sbjct 9900643 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900596
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | ||||| || || ||| |||||| || |||||||| || ||
Sbjct 9901277 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9901218
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || || |||||||| ||||| | |||||| ||| | ||
Sbjct 9901217 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9901158
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| || || || | |||| || | |||||| || | |||||
Sbjct 9901157 ATGCCTTCTTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 9901099
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || || || || || |||||||||||
Sbjct 9901098 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901051
Score = 113 bits (124), Expect = 3e-20
Identities = 164/228 (72%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | ||||| || || ||| |||||| || |||||||| || ||
Sbjct 9901049 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900990
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || || |||||||| ||||| | |||||| || | ||
Sbjct 9900989 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9900930
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| || || || | |||| || | |||||| || | |||||
Sbjct 9900929 ATGCCTTCTTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 9900871
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || || || || ||||||||||||||
Sbjct 9900870 TTCCA-GGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 9900824
Score = 109 bits (120), Expect = 4e-19
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||| || ||||| || | ||||| || |||||| ||||| || |||||||| || |
Sbjct 9901503 CACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAG 9901444
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || ||||| | || |||| || || |||||||| ||||| | |||||| || | |
Sbjct 9901443 ACAGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGG 9901384
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||||||||| || | ||| |||| || | |||||| || | |||
Sbjct 9901383 GGATGCCTTCTTTGTC-----TTGGATCTTTTGACATTCTCAATGGTGTCACTGGGCTCC 9901329
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||||| || || || || || || || || |||||||||||
Sbjct 9901328 ACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279
Score = 107 bits (118), Expect = 1e-18
Identities = 163/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | ||||| || || ||| ||||| || |||||||| || ||
Sbjct 9900594 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGA-TCTTTCTGGATGTTGTAGTCAGAC 9900536
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || || |||||||| ||||| | |||||| ||| | ||
Sbjct 9900535 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9900476
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| || || || | |||| || | |||||| || | |||||
Sbjct 9900475 ATGCCTTCTTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 9900417
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || || || || || |||||||||||
Sbjct 9900416 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900369
>seq85
Length=11587828
Score = 118 bits (130), Expect = 7e-22
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| ||||||||| |||||| || || |||| |||||||| || || |
Sbjct 256588 ACGCAGCACCAAGTGTAGAGTGGACTCTTTCTGGATAATGTAGTCGGAGAGAGTTCGGCC 256529
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| || | |||||||| |||||||||| ||| | ||||||| | || | |||||| ||
Sbjct 256528 ATCTTCTAGCTGTTTTCCAGCAAAAATCAGACGTTACTGATCTGGTGGGATACCTTCCTT 256469
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
|| ||||| ||| | ||| || | || || || | ||| || |||| ||||
Sbjct 256468 TTCCTGGATTTTGGCTTTGA-CATTCTCGATAGTATCACTGGGTTCAACCTCAAGAGTGA 256410
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || ||||| | || || ||||||||||||||
Sbjct 256409 TAGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 256373
>seq365
Length=1348131
Score = 89.7 bits (98), Expect = 3e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
|||||| | |||||| |||||| || |||||||| || ||||| || | | || ||
Sbjct 790459 CACCAAGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTTGGCCATCTTC 790400
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
| |||||||| ||||||||||||| || | |||| | || | |||||| |||||
Sbjct 790399 TAGTTGTTTTCTAGCAAAAATCAAACATTGTTCATCTGGTGGGATACCTTCCTTGTCCTG 790340
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
||||| | || |||| || | | || || | ||| || |||| ||||| || |
Sbjct 790339 GATTTT-GGCTTTGACATTCTCGATAATATCACTGGGTTCAACCTCAAGAGTGATGGTCT 790281
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | | || || ||||||||||| ||
Sbjct 790280 TGCCCATCAGGGTCTTCACAAAGATCTGTAT 790250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328696364411520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |