Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq103 122 6e-23 seq85 118 7e-22 seq365 89.7 3e-13 >seq103 Length=10584223 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 9900367 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900308 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| ||||| | |||||| ||| | || Sbjct 9900307 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9900248 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || || | |||| || | |||||| || | || || Sbjct 9900247 ATGCCTTCTTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 9900189 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || || ||||| || || |||||||||||||| || Sbjct 9900188 TTCCAGGGTGATGGTCTTGCCAGTTAAGGTCTTCACAAAGATCTGCATTGT 9900138 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||||||| || ||| |||||| || |||||||| || || Sbjct 9900822 CCACCTCTGAGACGAAGGACCAAATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900763 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| ||||| | |||||| ||| | || Sbjct 9900762 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 9900703 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || ||| | | |||| || | |||||| || | || || Sbjct 9900702 ATGCCTTCTTTGTCTTGGATCTTC-GCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 9900644 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 9900643 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900596 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 9901277 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9901218 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| ||||| | |||||| ||| | || Sbjct 9901217 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9901158 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || || | |||| || | |||||| || | ||||| Sbjct 9901157 ATGCCTTCTTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 9901099 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 9901098 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901051 Score = 113 bits (124), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 9901049 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900990 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| ||||| | |||||| || | || Sbjct 9900989 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9900930 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || || | |||| || | |||||| || | ||||| Sbjct 9900929 ATGCCTTCTTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 9900871 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || |||||||||||||| Sbjct 9900870 TTCCA-GGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 9900824 Score = 109 bits (120), Expect = 4e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | ||||| || |||||| ||||| || |||||||| || | Sbjct 9901503 CACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAG 9901444 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| || || |||||||| ||||| | |||||| || | | Sbjct 9901443 ACAGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGG 9901384 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| || | ||| |||| || | |||||| || | ||| Sbjct 9901383 GGATGCCTTCTTTGTC-----TTGGATCTTTTGACATTCTCAATGGTGTCACTGGGCTCC 9901329 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || || || || || ||||||||||| Sbjct 9901328 ACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279 Score = 107 bits (118), Expect = 1e-18 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || || ||| ||||| || |||||||| || || Sbjct 9900594 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGA-TCTTTCTGGATGTTGTAGTCAGAC 9900536 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| ||||| | |||||| ||| | || Sbjct 9900535 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9900476 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || || | |||| || | |||||| || | ||||| Sbjct 9900475 ATGCCTTCTTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 9900417 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 9900416 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900369 >seq85 Length=11587828 Score = 118 bits (130), Expect = 7e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| ||||||||| |||||| || || |||| |||||||| || || | Sbjct 256588 ACGCAGCACCAAGTGTAGAGTGGACTCTTTCTGGATAATGTAGTCGGAGAGAGTTCGGCC 256529 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | |||||||| |||||||||| ||| | ||||||| | || | |||||| || Sbjct 256528 ATCTTCTAGCTGTTTTCCAGCAAAAATCAGACGTTACTGATCTGGTGGGATACCTTCCTT 256469 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || ||||| ||| | ||| || | || || || | ||| || |||| |||| Sbjct 256468 TTCCTGGATTTTGGCTTTGA-CATTCTCGATAGTATCACTGGGTTCAACCTCAAGAGTGA 256410 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || ||||| | || || |||||||||||||| Sbjct 256409 TAGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 256373 >seq365 Length=1348131 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| | |||||| |||||| || |||||||| || ||||| || | | || || Sbjct 790459 CACCAAGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTTGGCCATCTTC 790400 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | |||||||| ||||||||||||| || | |||| | || | |||||| ||||| Sbjct 790399 TAGTTGTTTTCTAGCAAAAATCAAACATTGTTCATCTGGTGGGATACCTTCCTTGTCCTG 790340 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||| | || |||| || | | || || | ||| || |||| ||||| || | Sbjct 790339 GATTTT-GGCTTTGACATTCTCGATAATATCACTGGGTTCAACCTCAAGAGTGATGGTCT 790281 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | | || || ||||||||||| || Sbjct 790280 TGCCCATCAGGGTCTTCACAAAGATCTGTAT 790250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328696364411520