Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq103 98.7 9e-16 seq179 87.8 2e-12 >seq103 Length=10584223 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | |||||||| || ||||||||||| || ||| || |||||| Sbjct 9901259 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 9901200 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| | | ||| || |||||||| ||||||||||| || Sbjct 9901199 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGG 9901140 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| || | | || | || || | ||||||||||| | || | || || Sbjct 9901139 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 9901080 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | ||| |||||||| Sbjct 9901079 CCAGTCAAGGTCTTCACGAAGATCTGCAT 9901051 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | |||||||| || ||||||||||| || ||| || |||||| Sbjct 9900804 ACCAAATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 9900745 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| | | ||| || |||||||| ||||||||||| || Sbjct 9900744 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 9900685 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || || | ||||| ||||| | || | || || Sbjct 9900684 ATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCCAGGGTGATGGTCTTG 9900625 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | ||| |||||||| Sbjct 9900624 CCAGTCAAGGTCTTCACGAAGATCTGCAT 9900596 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || ||||| || ||||||||||| || ||| || |||||| Sbjct 9900576 ACCAAGTGCAGGGTGGA-TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 9900518 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| | | ||| || |||||||| ||||||||||| || Sbjct 9900517 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGG 9900458 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| || | | || | || || | ||||||||||| | || | || || Sbjct 9900457 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 9900398 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | ||| |||||||| Sbjct 9900397 CCAGTCAAGGTCTTCACGAAGATCTGCAT 9900369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | || ||||| || ||||||||||| || ||| || Sbjct 9901493 CAAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 9901434 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| | | ||| || || || || |||||||| Sbjct 9901433 ACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTC 9901374 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || ||||| | | || | || || | ||||||||||| | || Sbjct 9901373 TTTGTCTTGGATCTTTTG----ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGT 9901318 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||||| || || | ||| |||||||| Sbjct 9901317 GATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | |||||||| || ||||||||||| || ||| || |||||| Sbjct 9900349 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 9900290 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| | | ||| || |||||||| ||||||||||| || Sbjct 9900289 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGG 9900230 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| || | | || | || || | ||||| ||||| | || | || || Sbjct 9900229 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCCAGGGTGATGGTCTTG 9900170 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | || || | || |||||||| Sbjct 9900169 CCAGTTAAGGTCTTCACAAAGATCTGCAT 9900141 >seq179 Length=6459238 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || || || | ||||| ||||||||||| ||| ||||| || ||||||||| Sbjct 3627940 TACTCTACTATCTCTGTGCACAAATTGCTGCATTTGATGGTTCCCAGGTTCTGCTGATTG 3627999 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 ||||||||||| || ||||||| |||||||||| || Sbjct 3628000 CTTTTCCGATTACAGCTGTCTTTGTAGAGCATGTAAGG 3628037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476599844738160