Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq103 98.7 9e-16
seq179 87.8 2e-12
>seq103
Length=10584223
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | |||||||| || ||||||||||| || ||| || ||||||
Sbjct 9901259 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 9901200
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| || |||| | |||| | | ||| || |||||||| ||||||||||| ||
Sbjct 9901199 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGG 9901140
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| ||| || | | || | || || | ||||||||||| | || | || ||
Sbjct 9901139 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 9901080
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||||| || || | ||| ||||||||
Sbjct 9901079 CCAGTCAAGGTCTTCACGAAGATCTGCAT 9901051
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
|||||||| | | | |||||||| || ||||||||||| || ||| || ||||||
Sbjct 9900804 ACCAAATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 9900745
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| || |||| | |||| | | ||| || |||||||| ||||||||||| ||
Sbjct 9900744 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 9900685
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || || | | || | || || | ||||| ||||| | || | || ||
Sbjct 9900684 ATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCCAGGGTGATGGTCTTG 9900625
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||||| || || | ||| ||||||||
Sbjct 9900624 CCAGTCAAGGTCTTCACGAAGATCTGCAT 9900596
Score = 89.7 bits (98), Expect = 5e-13
Identities = 146/209 (70%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | || ||||| || ||||||||||| || ||| || ||||||
Sbjct 9900576 ACCAAGTGCAGGGTGGA-TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 9900518
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| || |||| | |||| | | ||| || |||||||| ||||||||||| ||
Sbjct 9900517 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGG 9900458
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| ||| || | | || | || || | ||||||||||| | || | || ||
Sbjct 9900457 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 9900398
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||||| || || | ||| ||||||||
Sbjct 9900397 CCAGTCAAGGTCTTCACGAAGATCTGCAT 9900369
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/219 (69%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
|||||||| ||||| || | | || ||||| || ||||||||||| || ||| ||
Sbjct 9901493 CAAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 9901434
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
|||||| ||||| || |||| | |||| | | ||| || || || || ||||||||
Sbjct 9901433 ACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTC 9901374
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
||| || || ||||| | | || | || || | ||||||||||| | ||
Sbjct 9901373 TTTGTCTTGGATCTTTTG----ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGT 9901318
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || || ||||||| || || | ||| ||||||||
Sbjct 9901317 GATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | |||||||| || ||||||||||| || ||| || ||||||
Sbjct 9900349 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 9900290
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| || |||| | |||| | | ||| || |||||||| ||||||||||| ||
Sbjct 9900289 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGG 9900230
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| ||| || | | || | || || | ||||| ||||| | || | || ||
Sbjct 9900229 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCCAGGGTGATGGTCTTG 9900170
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| | || || | || ||||||||
Sbjct 9900169 CCAGTTAAGGTCTTCACAAAGATCTGCAT 9900141
>seq179
Length=6459238
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564
|||| || || || | ||||| ||||||||||| ||| ||||| || |||||||||
Sbjct 3627940 TACTCTACTATCTCTGTGCACAAATTGCTGCATTTGATGGTTCCCAGGTTCTGCTGATTG 3627999
Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602
||||||||||| || ||||||| |||||||||| ||
Sbjct 3628000 CTTTTCCGATTACAGCTGTCTTTGTAGAGCATGTAAGG 3628037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476599844738160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |