Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq1323 107 6e-20
seq679 107 6e-20
seq191 105 2e-19
seq60 104 7e-19
seq283 98.7 3e-17
seq163 98.7 3e-17
seq134 98.7 3e-17
seq103 98.7 3e-17
seq99 91.5 5e-15
seq34 78.8 3e-11
>seq1323
Length=22487
Score = 107 bits (118), Expect = 6e-20
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 15384 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 15325
Query 2829 CCGGGCTTCAGC 2840
||||| ||||||
Sbjct 15324 CCGGGTTTCAGC 15313
>seq679
Length=48299
Score = 107 bits (118), Expect = 6e-20
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 35804 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 35863
Query 2829 CCGGGCTTCAGC 2840
||||| ||||||
Sbjct 35864 CCGGGTTTCAGC 35875
>seq191
Length=6069290
Score = 105 bits (116), Expect = 2e-19
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 55073 GGCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAACGGTCCCTGGTTCAAT 55132
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 55133 CCCGGGTTTCGGC 55145
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 35522 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 35463
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 35462 CCGGGTTTCGGC 35451
Score = 93.3 bits (102), Expect = 1e-15
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||| ||||||||| |||||||||||||||||||||||| |||||||
Sbjct 55970 GGCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCC-GGTTCAAT 56028
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 56029 CCCGGGTTTCGGC 56041
>seq60
Length=14251744
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 13430667 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 13430608
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 13430607 CCGGGTTTCGGC 13430596
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 13418502 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 13418561
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 13418562 CCCGGGTTTCGGC 13418574
>seq283
Length=2979027
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1671213 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1671272
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1671273 CCGGGTTTCGGC 1671284
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1681830 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1681889
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1681890 CCGGGTTTCGGC 1681901
>seq163
Length=7366820
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 6009487 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 6009428
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 6009427 CCGGGTTTCGGC 6009416
>seq134
Length=8699209
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1203070 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1203011
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1203010 CCGGGTTTCGGC 1202999
>seq103
Length=10584223
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 9879791 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 9879850
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 9879851 CCGGGTTTCGGC 9879862
>seq99
Length=10716452
Score = 91.5 bits (100), Expect = 5e-15
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 10428318 GCTGAAATAGCTTGGTTTGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 10428259
Query 2829 CCGGGCTT 2836
| ||| ||
Sbjct 10428258 CTGGGTTT 10428251
>seq34
Length=19201427
Score = 78.8 bits (86), Expect = 3e-11
Identities = 62/73 (85%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAAC 2827
|| ||| |||||||||||| ||||| ||||| |||||||| | |||||||| |||||||
Sbjct 14632750 GCCGAAATAGCTCAGTTGGAAGAGCGTTAGATTGAAGATCTTGAAGGTCCCCGGTTCAAT 14632809
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 14632810 CCCGGGTTTCGGC 14632822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15849269585370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |