Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1323 107 6e-20 seq679 107 6e-20 seq191 105 2e-19 seq60 104 7e-19 seq283 98.7 3e-17 seq163 98.7 3e-17 seq134 98.7 3e-17 seq103 98.7 3e-17 seq99 91.5 5e-15 seq34 78.8 3e-11 >seq1323 Length=22487 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 15384 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 15325 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 15324 CCGGGTTTCAGC 15313 >seq679 Length=48299 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 35804 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 35863 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 35864 CCGGGTTTCAGC 35875 >seq191 Length=6069290 Score = 105 bits (116), Expect = 2e-19 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 55073 GGCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAACGGTCCCTGGTTCAAT 55132 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 55133 CCCGGGTTTCGGC 55145 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 35522 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 35463 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 35462 CCGGGTTTCGGC 35451 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||| ||||||||| |||||||||||||||||||||||| ||||||| Sbjct 55970 GGCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCC-GGTTCAAT 56028 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 56029 CCCGGGTTTCGGC 56041 >seq60 Length=14251744 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 13430667 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 13430608 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 13430607 CCGGGTTTCGGC 13430596 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 13418502 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 13418561 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 13418562 CCCGGGTTTCGGC 13418574 >seq283 Length=2979027 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1671213 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1671272 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1671273 CCGGGTTTCGGC 1671284 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1681830 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1681889 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1681890 CCGGGTTTCGGC 1681901 >seq163 Length=7366820 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 6009487 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 6009428 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6009427 CCGGGTTTCGGC 6009416 >seq134 Length=8699209 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1203070 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1203011 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1203010 CCGGGTTTCGGC 1202999 >seq103 Length=10584223 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 9879791 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 9879850 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 9879851 CCGGGTTTCGGC 9879862 >seq99 Length=10716452 Score = 91.5 bits (100), Expect = 5e-15 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 10428318 GCTGAAATAGCTTGGTTTGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 10428259 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 10428258 CTGGGTTT 10428251 >seq34 Length=19201427 Score = 78.8 bits (86), Expect = 3e-11 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAAC 2827 || ||| |||||||||||| ||||| ||||| |||||||| | |||||||| ||||||| Sbjct 14632750 GCCGAAATAGCTCAGTTGGAAGAGCGTTAGATTGAAGATCTTGAAGGTCCCCGGTTCAAT 14632809 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 14632810 CCCGGGTTTCGGC 14632822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849269585370