Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq36 257 2e-63
seq100 114 2e-20
seq29 91.5 2e-13
>seq36
Length=18184789
Score = 257 bits (284), Expect = 2e-63
Identities = 510/752 (68%), Gaps = 10/752 (1%)
Strand=Plus/Plus
Query 146827 AAATCTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGG 146886
|| || || ||| ||||||| || ||| | | || | | ||| ||||||| |||
Sbjct 7685834 AAGTCCTCAGCCTTGAAATCATCAATGGCTTTGACTTCTCGAAGAATTCTGAGCTTAGGG 7685893
Query 146887 AAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGA 146944
|| |||| || | || || |||||||||||||| ||| | | || || | ||| |
Sbjct 7685894 AAAGGTCTTGGTT--CTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATA 7685951
Query 146945 CGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCA 147004
|| || || ||||| ||||| ||||| || || ||||| ||||| || || || || |
Sbjct 7685952 TATGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAA 7686011
Query 147005 CCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCC 147064
||||||||| ||||| ||||| ||||| |||||||| || ||||| |||||||| || |
Sbjct 7686012 TCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTC 7686071
Query 147065 CCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGA 147124
| || | |||||| ||||| || || ||||| || | || || ||||| || ||
Sbjct 7686072 CAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAG 7686131
Query 147125 TGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCA 147184
|||||| || || | ||||| || || || || ||||| || | | | |
Sbjct 7686132 CGTGGCATGGAGGTAATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAATGA 7686191
Query 147185 GCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGC 147244
|| ||| | || || | || || || || || || || ||||| |
Sbjct 7686192 TCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTC 7686251
Query 147245 CCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGA 147304
| || || || | ||| || ||| |||||||| || ||||||||||
Sbjct 7686252 CTTGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGA 7686311
Query 147305 AGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTG---A 147361
|||| |||||||| |||| || || || |||| | ||| | || ||||| |
Sbjct 7686312 AGCCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAA---CCCCTGCTTGTCCA 7686368
Query 147362 GAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAG 147421
||| || | || || | |||||||||||| ||||| ||||| |||||||||||||
Sbjct 7686369 AAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAG 7686428
Query 147422 AGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCC 147481
| ||||| ||| || ||||| ||||||||||||| || ||| |||| || || |
Sbjct 7686429 CATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACAC 7686488
Query 147482 TCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACA 147541
|||||| ||||||| || |||| || | || || | || || |||||||
Sbjct 7686489 GCTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAACA 7686548
Query 147542 CAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573
|||||| ||||| |||||||| | |||||||
Sbjct 7686549 CAGACACGGTGCCGGTGCCCGTGCGGTCCTCC 7686580
>seq100
Length=10668473
Score = 114 bits (126), Expect = 2e-20
Identities = 119/157 (76%), Gaps = 12/157 (8%)
Strand=Plus/Minus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 9801376 AGAGTTACCTGGGCTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACCTGGAGGAAGTGA 9801317
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||||||||| ||||| | || || |||||| || ||| | || ||
Sbjct 9801316 TGCCTCAGGCAGAGAA---------GAATGAAG---TGGACATCAAAGAGAACGTGGGCT 9801269
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCT 178387
|| | || || ||||| ||| | || ||| |||||||
Sbjct 9801268 CTTTAGGCGAGAAGCTGAAGGCACTGAGATTGAGGCT 9801232
>seq29
Length=20348574
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 8618 TGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATAAAGTACA 8677
||||||| | | || || | ||||||||| ||||| | || ||||||| |||||||
Sbjct 8685599 TGGTGTTCATCATAGGCCTGCTGGGCAATGCCATGGTGGTGCTGATCCTCATGAAGTACA 8685658
Query 8678 AGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGCTGC 8737
|||| |||| || |||||| ||||||| ||| |||||| ||||| | || ||||
Sbjct 8685659 AGAGACTCAAGACCATGACTAACATCTACCTTTTCAACTTGGCCATCTCAGATTTGCTCT 8685718
Query 8738 TGATTTTCACCCTCCCCTTTTGGATTCACT 8767
| | | || || || || ||||||||||
Sbjct 8685719 TCCTCATTACACTTCCATTCTGGATTCACT 8685748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583474098398400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |