Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq36 257 2e-63 seq100 114 2e-20 seq29 91.5 2e-13 >seq36 Length=18184789 Score = 257 bits (284), Expect = 2e-63 Identities = 510/752 (68%), Gaps = 10/752 (1%) Strand=Plus/Plus Query 146827 AAATCTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGG 146886 || || || ||| ||||||| || ||| | | || | | ||| ||||||| ||| Sbjct 7685834 AAGTCCTCAGCCTTGAAATCATCAATGGCTTTGACTTCTCGAAGAATTCTGAGCTTAGGG 7685893 Query 146887 AAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGA 146944 || |||| || | || || |||||||||||||| ||| | | || || | ||| | Sbjct 7685894 AAAGGTCTTGGTT--CTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATA 7685951 Query 146945 CGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCA 147004 || || || ||||| ||||| ||||| || || ||||| ||||| || || || || | Sbjct 7685952 TATGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAA 7686011 Query 147005 CCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCC 147064 ||||||||| ||||| ||||| ||||| |||||||| || ||||| |||||||| || | Sbjct 7686012 TCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTC 7686071 Query 147065 CCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGA 147124 | || | |||||| ||||| || || ||||| || | || || ||||| || || Sbjct 7686072 CAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAG 7686131 Query 147125 TGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCA 147184 |||||| || || | ||||| || || || || ||||| || | | | | Sbjct 7686132 CGTGGCATGGAGGTAATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAATGA 7686191 Query 147185 GCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGC 147244 || ||| | || || | || || || || || || || ||||| | Sbjct 7686192 TCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTC 7686251 Query 147245 CCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGA 147304 | || || || | ||| || ||| |||||||| || |||||||||| Sbjct 7686252 CTTGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGA 7686311 Query 147305 AGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTG---A 147361 |||| |||||||| |||| || || || |||| | ||| | || ||||| | Sbjct 7686312 AGCCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAA---CCCCTGCTTGTCCA 7686368 Query 147362 GAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAG 147421 ||| || | || || | |||||||||||| ||||| ||||| ||||||||||||| Sbjct 7686369 AAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAG 7686428 Query 147422 AGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCC 147481 | ||||| ||| || ||||| ||||||||||||| || ||| |||| || || | Sbjct 7686429 CATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACAC 7686488 Query 147482 TCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACA 147541 |||||| ||||||| || |||| || | || || | || || ||||||| Sbjct 7686489 GCTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAACA 7686548 Query 147542 CAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 |||||| ||||| |||||||| | ||||||| Sbjct 7686549 CAGACACGGTGCCGGTGCCCGTGCGGTCCTCC 7686580 >seq100 Length=10668473 Score = 114 bits (126), Expect = 2e-20 Identities = 119/157 (76%), Gaps = 12/157 (8%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 || ||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 9801376 AGAGTTACCTGGGCTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACCTGGAGGAAGTGA 9801317 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||||||||| ||||| | || || |||||| || ||| | || || Sbjct 9801316 TGCCTCAGGCAGAGAA---------GAATGAAG---TGGACATCAAAGAGAACGTGGGCT 9801269 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCT 178387 || | || || ||||| ||| | || ||| ||||||| Sbjct 9801268 CTTTAGGCGAGAAGCTGAAGGCACTGAGATTGAGGCT 9801232 >seq29 Length=20348574 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 8618 TGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATAAAGTACA 8677 ||||||| | | || || | ||||||||| ||||| | || ||||||| ||||||| Sbjct 8685599 TGGTGTTCATCATAGGCCTGCTGGGCAATGCCATGGTGGTGCTGATCCTCATGAAGTACA 8685658 Query 8678 AGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGCTGC 8737 |||| |||| || |||||| ||||||| ||| |||||| ||||| | || |||| Sbjct 8685659 AGAGACTCAAGACCATGACTAACATCTACCTTTTCAACTTGGCCATCTCAGATTTGCTCT 8685718 Query 8738 TGATTTTCACCCTCCCCTTTTGGATTCACT 8767 | | | || || || || |||||||||| Sbjct 8685719 TCCTCATTACACTTCCATTCTGGATTCACT 8685748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583474098398400