Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq5 183 4e-40
seq701 170 3e-36
seq168 170 3e-36
>seq5
Length=36077823
Score = 183 bits (202), Expect = 4e-40
Identities = 180/231 (78%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||| ||||| |||||||| |||||| || || |||| ||| |||| |||
Sbjct 31706916 TCTACAAAGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCA 31706969
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||||||||| |||| ||||||| | |||||| |
Sbjct 31706970 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCC 31707029
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||||| || |||||||||| ||| ||| | || ||||||||||| |||||||
Sbjct 31707030 GCCTGGCGCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 31707089
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| || ||||||| ||||||||| |||||||||||||
Sbjct 31707090 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 31707140
Score = 179 bits (198), Expect = 5e-39
Identities = 179/231 (77%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||| |||||| || || |||| ||| |||| |||
Sbjct 31741170 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCA 31741223
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||||||||| |||| ||||| | || |||||| |
Sbjct 31741224 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATAGCCAGCGAGGCTTCCC 31741283
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||||| || |||||||||| || ||| | || ||||||||||| |||||||
Sbjct 31741284 GCCTGGCGCACTACAACAAGCGCTCGACCATCACTTCTCGGGAGATCCAGACGGCCGTGC 31741343
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| ||| | ||| ||| || ||||||| ||||||||| |||||||||||||
Sbjct 31741344 GTCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 31741394
Score = 168 bits (186), Expect = 1e-35
Identities = 178/232 (77%), Gaps = 7/232 (3%)
Strand=Plus/Minus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||| ||||| |||||||| |||||| || || |||| ||| |||| |||
Sbjct 31739234 TCTACAAAGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCA 31739181
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| |||||||| || || ||||||||||| |||| ||||||| | |||||| |
Sbjct 31739180 TGGGCATCATGAATTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCC 31739121
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||||| || |||||||||| || ||| | || ||||||||||| |||||||
Sbjct 31739120 GCCTGGCGCACTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 31739061
Query 725092 GCCTGATCATGCGC-GGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| | || || ||||||| ||||||||| |||||||||||||
Sbjct 31739060 GCCTGCTGCTGCCCGGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 31739009
Score = 152 bits (168), Expect = 7e-31
Identities = 175/231 (76%), Gaps = 12/231 (5%)
Strand=Plus/Minus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||| ||||| |||||||| ||||| || || | |||| ||| |||| | |
Sbjct 31720784 TCTACAAAGTGCTGAAGCAGGTCCACCC--GACACG----GGCATC-TCCTCCAAGGCTA 31720732
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||||||||| |||| ||||||| | |||||| |
Sbjct 31720731 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCC 31720672
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||||| || |||| ||| ||| ||| | || ||||||||||| |||||||
Sbjct 31720671 GCCTGGCGCACT---ACAAACGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 31720615
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| | ||||||| ||||||||| |||||||||||||
Sbjct 31720614 GCCTGCTGCTGCCCGGGG--CTGGCCAAGCACGCCGTGTCCGAGGGCACCA 31720566
>seq701
Length=45252
Score = 170 bits (188), Expect = 3e-36
Identities = 177/229 (77%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||| ||||| || ||| |||||||| || |||||
Sbjct 3179 TACAAGGTGCTGAAGCAGGTCCACCCTGACAC---TGGCATCTCCTCCAA--AG-CCATG 3232
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| || |||| | |||||| |||
Sbjct 3233 GGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGGATCGCCGGCGAGGCGTCCCGC 3292
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| | |||||||||| ||| ||| | || ||||||||||| |||||||||
Sbjct 3293 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 3352
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| |||||||||| ||||||||| |||||||||||||
Sbjct 3353 CTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3401
Score = 170 bits (188), Expect = 3e-36
Identities = 177/229 (77%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||| ||||| || ||| |||||||| || |||||
Sbjct 23544 TACAAGGTGCTGAAGCAGGTCCACCCTGACAC---TGGCATCTCCTCCAA--AG-CCATG 23491
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| || |||| | |||||| |||
Sbjct 23490 GGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGGATCGCCGGCGAGGCGTCCCGC 23431
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| | |||||||||| ||| ||| | || ||||||||||| |||||||||
Sbjct 23430 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 23371
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| |||||||||| ||||||||| |||||||||||||
Sbjct 23370 CTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 23322
>seq168
Length=7028291
Score = 170 bits (188), Expect = 3e-36
Identities = 176/229 (77%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||| |||||| || || |||| ||| |||| |||||
Sbjct 2258493 TACAAGGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 2258546
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| || |||| | ||||| |||
Sbjct 2258547 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATCGCCGGAGAGGCGTCCCGC 2258606
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| | |||||||||| ||| ||| | || ||||||||||| |||||||||
Sbjct 2258607 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2258666
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| || ||||||| ||||||||| |||||||||||||
Sbjct 2258667 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2258715
Score = 170 bits (188), Expect = 3e-36
Identities = 176/229 (77%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||| |||||| || || |||| ||| |||| |||||
Sbjct 2297561 TACAAGGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 2297614
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| || |||| | ||||| |||
Sbjct 2297615 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATCGCCGGAGAGGCGTCCCGC 2297674
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| | |||||||||| ||| ||| | || ||||||||||| |||||||||
Sbjct 2297675 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2297734
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| || ||||||| ||||||||| |||||||||||||
Sbjct 2297735 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2297783
Score = 170 bits (188), Expect = 3e-36
Identities = 176/229 (77%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||| |||||| || || |||| ||| |||| |||||
Sbjct 2311205 TACAAGGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 2311152
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| || |||| | ||||| |||
Sbjct 2311151 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATCGCCGGAGAGGCGTCCCGC 2311092
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| | |||||||||| ||| ||| | || ||||||||||| |||||||||
Sbjct 2311091 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2311032
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| || ||||||| ||||||||| |||||||||||||
Sbjct 2311031 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2310983
Score = 159 bits (176), Expect = 5e-33
Identities = 174/229 (76%), Gaps = 9/229 (4%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||| |||||| || || |||| ||| |||| |||||
Sbjct 2441660 TACAAGGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 2441607
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| || |||| | ||| || |||
Sbjct 2441606 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATCGCCGGCGAAGCGTCACGC 2441547
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| | |||||||||| ||| ||| | || ||||||||||| |||||||||
Sbjct 2441546 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2441487
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| ||| ||| || ||||||| ||||||||| |||||||| ||||
Sbjct 2441486 CTG---CTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGTACCA 2441441
Score = 145 bits (160), Expect = 1e-28
Identities = 171/229 (75%), Gaps = 7/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||| |||||| || || ||| ||| |||| | |||
Sbjct 2508325 TACAAGGTGCTGAAGCAGGTCCACCCCGATAC-----GGGCATT-TCCTCCAAGGCTATG 2508378
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| |||
Sbjct 2508379 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 2508438
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
|||||| | ||||||||| ||| ||| | || ||||||||||| |||||||||
Sbjct 2508439 TTGGCGCATTACAACAAGCGTTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2508498
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| ||| || || |||| ||||||||| |||||||| ||||
Sbjct 2508499 CTACTGCTGCCCGGGGAGCT-GCCAAGCACGCCGTGTCCGAGGGTACCA 2508546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177627362796772
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |