Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 183 4e-40 seq701 170 3e-36 seq168 170 3e-36 >seq5 Length=36077823 Score = 183 bits (202), Expect = 4e-40 Identities = 180/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| ||||| |||||||| |||||| || || |||| ||| |||| ||| Sbjct 31706916 TCTACAAAGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCA 31706969 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | |||||| | Sbjct 31706970 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCC 31707029 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| ||| ||| | || ||||||||||| ||||||| Sbjct 31707030 GCCTGGCGCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 31707089 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 31707090 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 31707140 Score = 179 bits (198), Expect = 5e-39 Identities = 179/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| || || |||| ||| |||| ||| Sbjct 31741170 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCA 31741223 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||| | || |||||| | Sbjct 31741224 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATAGCCAGCGAGGCTTCCC 31741283 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| || ||| | || ||||||||||| ||||||| Sbjct 31741284 GCCTGGCGCACTACAACAAGCGCTCGACCATCACTTCTCGGGAGATCCAGACGGCCGTGC 31741343 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 31741344 GTCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 31741394 Score = 168 bits (186), Expect = 1e-35 Identities = 178/232 (77%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| ||||| |||||||| |||||| || || |||| ||| |||| ||| Sbjct 31739234 TCTACAAAGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCA 31739181 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||| || || ||||||||||| |||| ||||||| | |||||| | Sbjct 31739180 TGGGCATCATGAATTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCC 31739121 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| || ||| | || ||||||||||| ||||||| Sbjct 31739120 GCCTGGCGCACTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 31739061 Query 725092 GCCTGATCATGCGC-GGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| | || || ||||||| ||||||||| ||||||||||||| Sbjct 31739060 GCCTGCTGCTGCCCGGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 31739009 Score = 152 bits (168), Expect = 7e-31 Identities = 175/231 (76%), Gaps = 12/231 (5%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| ||||| |||||||| ||||| || || | |||| ||| |||| | | Sbjct 31720784 TCTACAAAGTGCTGAAGCAGGTCCACCC--GACACG----GGCATC-TCCTCCAAGGCTA 31720732 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | |||||| | Sbjct 31720731 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCC 31720672 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||| ||| ||| ||| | || ||||||||||| ||||||| Sbjct 31720671 GCCTGGCGCACT---ACAAACGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 31720615 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| | ||||||| ||||||||| ||||||||||||| Sbjct 31720614 GCCTGCTGCTGCCCGGGG--CTGGCCAAGCACGCCGTGTCCGAGGGCACCA 31720566 >seq701 Length=45252 Score = 170 bits (188), Expect = 3e-36 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| || ||| |||||||| || ||||| Sbjct 3179 TACAAGGTGCTGAAGCAGGTCCACCCTGACAC---TGGCATCTCCTCCAA--AG-CCATG 3232 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| || |||| | |||||| ||| Sbjct 3233 GGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGGATCGCCGGCGAGGCGTCCCGC 3292 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| ||| ||| | || ||||||||||| ||||||||| Sbjct 3293 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 3352 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| |||||||||| ||||||||| ||||||||||||| Sbjct 3353 CTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3401 Score = 170 bits (188), Expect = 3e-36 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| || ||| |||||||| || ||||| Sbjct 23544 TACAAGGTGCTGAAGCAGGTCCACCCTGACAC---TGGCATCTCCTCCAA--AG-CCATG 23491 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| || |||| | |||||| ||| Sbjct 23490 GGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGGATCGCCGGCGAGGCGTCCCGC 23431 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| ||| ||| | || ||||||||||| ||||||||| Sbjct 23430 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 23371 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| |||||||||| ||||||||| ||||||||||||| Sbjct 23370 CTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 23322 >seq168 Length=7028291 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| || || |||| ||| |||| ||||| Sbjct 2258493 TACAAGGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 2258546 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| || |||| | ||||| ||| Sbjct 2258547 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATCGCCGGAGAGGCGTCCCGC 2258606 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| ||| ||| | || ||||||||||| ||||||||| Sbjct 2258607 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2258666 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 2258667 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2258715 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| || || |||| ||| |||| ||||| Sbjct 2297561 TACAAGGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 2297614 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| || |||| | ||||| ||| Sbjct 2297615 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATCGCCGGAGAGGCGTCCCGC 2297674 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| ||| ||| | || ||||||||||| ||||||||| Sbjct 2297675 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2297734 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 2297735 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2297783 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| || || |||| ||| |||| ||||| Sbjct 2311205 TACAAGGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 2311152 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| || |||| | ||||| ||| Sbjct 2311151 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATCGCCGGAGAGGCGTCCCGC 2311092 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| ||| ||| | || ||||||||||| ||||||||| Sbjct 2311091 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2311032 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 2311031 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2310983 Score = 159 bits (176), Expect = 5e-33 Identities = 174/229 (76%), Gaps = 9/229 (4%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| || || |||| ||| |||| ||||| Sbjct 2441660 TACAAGGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 2441607 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| || |||| | ||| || ||| Sbjct 2441606 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATCGCCGGCGAAGCGTCACGC 2441547 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| ||| ||| | || ||||||||||| ||||||||| Sbjct 2441546 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2441487 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| ||| ||| || ||||||| ||||||||| |||||||| |||| Sbjct 2441486 CTG---CTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGTACCA 2441441 Score = 145 bits (160), Expect = 1e-28 Identities = 171/229 (75%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| || || ||| ||| |||| | ||| Sbjct 2508325 TACAAGGTGCTGAAGCAGGTCCACCCCGATAC-----GGGCATT-TCCTCCAAGGCTATG 2508378 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | |||||| ||| Sbjct 2508379 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 2508438 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| | ||||||||| ||| ||| | || ||||||||||| ||||||||| Sbjct 2508439 TTGGCGCATTACAACAAGCGTTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2508498 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || || |||| ||||||||| |||||||| |||| Sbjct 2508499 CTACTGCTGCCCGGGGAGCT-GCCAAGCACGCCGTGTCCGAGGGTACCA 2508546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177627362796772