Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq48 138 2e-27
seq8 129 8e-25
seq179 114 2e-20
>seq48
Length=16487017
Score = 138 bits (152), Expect = 2e-27
Identities = 106/126 (84%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||||||||| | ||| || ||||| || | ||||||||||| ||| || || |
Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||||| |||||||| |||||||||||||| ||||| || |||||||| |
Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721
Query 39759 CAACAA 39764
| ||||
Sbjct 7775720 CTACAA 7775715
>seq8
Length=27308231
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || || || |||||||||||||| ||||| | ||| |
Sbjct 9728538 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 9728597
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| ||||| ||||||||||| || || ||||| || ||||| || || |||||||
Sbjct 9728598 TAAGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAATG 9728657
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | ||| |||||
Sbjct 9728658 CAACCACTCTTTCTCC 9728673
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173
||| |||||||| ||||| || || |||| |||| ||||||||| ||||| || ||| |
Sbjct 9743408 TACCTCTTCAGCGGTCCAGAAGGATGCCTGGGCCTGTTTGTACATTTTCCAGATGTCAGG 9743467
Query 40174 ATATTGTATTGGAAAAATAACAAATC 40199
||| || ||||||||||| |||||||
Sbjct 9743468 ATACTGAATTGGAAAAATGACAAATC 9743493
Score = 84.2 bits (92), Expect = 3e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058
||||||| ||||| |||||||||||||| || |||||||| ||||| | || || |
Sbjct 9734892 CCAAATTCTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATGTGAGAGATGA 9734951
Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATA 40109
|||| || ||||| | | ||| ||| ||||||| | | ||| |||||||
Sbjct 9734952 AATACTTCTCATCTGATTTCAGTTTGTTCCAGTGAGGAAGATCCTTTGATA 9735002
>seq179
Length=6459238
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| || ||||| ||||| || || |||||| ||| | || || || || || ||||
Sbjct 3615050 TCCAACCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 3615109
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
||| || ||||| ||||| ||||| ||||||||||| |||||||| || |||| | | |
Sbjct 3615110 TCAAAGACTGACTCTGATCAATGAACGCTCCTCTATCAGCCGCCATCTTGATAACAGTTT 3615169
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| || | |||||||| | ||||||| | | ||| || | || || ||||
Sbjct 3615170 TCTGTGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCTTCAGGAA 3615220
Score = 113 bits (124), Expect = 6e-20
Identities = 131/177 (74%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| |||| || | ||| |||||||| || || ||||| || | || || ||||||||||
Sbjct 3640122 CACCACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTA 3640181
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450
|| ||||||||||| || | || || | || || || |||| ||||| || || |
Sbjct 3640182 AGATGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGT 3640241
Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 70507
||||||| | || || ||||| | |||| ||||| ||||||||||||| ||||
Sbjct 3640242 CTAATTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298
Score = 105 bits (116), Expect = 9e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || | ||||| ||||| ||||| || ||||| || ||||| | ||
Sbjct 3619869 TGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 3619928
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|||||||| || | ||| |||||||| || ||||||||||| || || | || ||||||
Sbjct 3619929 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAACTG 3619988
Query 68839 TTTCTAAGACCAT 68851
||||| | ||||
Sbjct 3619989 TTTCTGATGCCAT 3620001
Score = 104 bits (114), Expect = 3e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006
|| || | |||||||||||| || || | || | || | ||||| || || || ||
Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAG 3625113
Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066
|| || |||||||| |||||||| |||| ||||| || || |||||| |||| ||
Sbjct 3625114 GCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCA 3625173
Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126
|| ||||| | || ||||| ||||| || | ||||| || |||||||| || ||
Sbjct 3625174 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGG 3625233
Query 69127 CTATGTCTCTTATTTGA 69143
| ||| | ||||||||
Sbjct 3625234 CGATGACGTTTATTTGA 3625250
Score = 86.0 bits (94), Expect = 9e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
|| ||||||||||| ||||| || ||||| || || | ||| ||||| |||| || |
Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| || || || || || || ||||| ||||| || | ||| || | |||||||||
Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707
Query 69715 TC 69716
||
Sbjct 3630708 TC 3630709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686892434397840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |