Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq36 203 3e-47 seq23 118 8e-22 seq48 116 3e-21 seq8 91.5 1e-13 seq19 87.8 1e-12 seq68 86.0 5e-12 >seq36 Length=18184789 Score = 203 bits (224), Expect = 3e-47 Identities = 449/671 (67%), Gaps = 2/671 (0%) Strand=Plus/Minus Query 40684 GAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAAC 40743 || || ||||||| ||||| || || || |||| ||||| || | || || | Sbjct 7686518 GAGATGAGTTTCCTTTGCTGACAACCAAGCGTGTGTTCTGGAAGGGTGTGCTGGAGGAGC 7686459 Query 40744 TGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACA 40803 || | |||||||| || |||| || ||||||||| | | || | | |||||| | | Sbjct 7686458 TGCTGTGGTTTATTAAGGGTTCCACAAATGCTAAGGAGCTCTCTGCCAAAGGAGTAAAAA 7686399 Query 40804 TTTGGAATGCGCACAGTTCTAAA-ACATATTTGTCTAGCATAGGATTACAAGATAGGGAT 40862 | ||| | || | | ||| | || | || | | |||| || | || | || || Sbjct 7686398 TCTGGGACGCCAATGGATCTCGAGACTTTTTGGACAAGCAGGGGTTCACTACC-AGAGAG 7686340 Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922 ||||| ||| | || || || ||||| || |||| | |||||||||| ||| |||| | Sbjct 7686339 GAAGGAGATTTGGGACCAGTGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAA 7686280 Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982 ||| | | |||||| | ||||| |||||||| |||| || || || || Sbjct 7686279 GAGATGAATACAGATTATTCTGGACAAGGAGTGGATCAACTACAAAAAGTCATTGACACA 7686220 Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042 || ||| || |||| || | || | || || |||| || ||||| || | || | Sbjct 7686219 ATCAAAACCAATCCTCATGACAGAAGGATCATTATGTGTGCTTGGAATCCTAAAGATCTT 7686160 Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAA 41102 | | |||||||||| || || || || | |||||||| || || | |||||||| Sbjct 7686159 CCTCTGATGGCATTACCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAATGGTGAG 7686100 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 || || ||||| | || || |||| || || ||||| || ||||| ||||| ||||| Sbjct 7686099 CTTTCTTGTCAGCTATACCAGCGATCTGGAGATATGGGCCTTGGGGTGCCGTTCAACATT 7686040 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222 || ||||| | ||||| || || |||||||| || || || | || || ||||| Sbjct 7686039 GCCAGTTACTCCCTGCTAACCTACATGATTGCTCATGTCACAGGCCTGAAGCCAGGTGAT 7685980 Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAA 41282 ||||| ||||| | ||||||| ||||| ||| | ||||| || | ||| | | | Sbjct 7685979 TTTGTACACACTCTGGGAGATGCTCATATATACTTGAATCATATTGGGCCACTGAAAATT 7685920 Query 41283 CAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAAC 41342 || || ||| |||| ||||| || || | ||| ||| || | || || | Sbjct 7685919 CAGCTTCAGCGAGAACCAAGACCTTTCCCTAAGCTCAGAATTCTTCGAGAAGTCAAAGCC 7685860 Query 41343 ATTGATGATTT 41353 ||||||||||| Sbjct 7685859 ATTGATGATTT 7685849 >seq23 Length=22081990 Score = 118 bits (130), Expect = 8e-22 Identities = 201/290 (69%), Gaps = 1/290 (0%) Strand=Plus/Plus Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453 ||||||| || | |||||||| |||||||| | || | |||||| || || ||||| | Sbjct 870106 TCCAGCCATTTTTCTTCCAGTCTTTAACCCAACTTGTTATACCATTTATAGTAAACATAC 870165 Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGG 77513 |||||||| ||| |||||||| ||| || | | || ||||||| |||||| Sbjct 870166 TGTCTGTGCAGAGAACCAGCTTACAGATGTTTTGATTCTTGGCTTGTTCTGCTGCTTTAC 870225 Query 77514 ATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACAT 77573 | ||||| || ||||| || | |||||||||||| ||| ||||| || |||| Sbjct 870226 AGGCAGCATGTATTTCTGCTCTTTGGTTTGTCTGTCACCCAGGAAGTCTATCACTCACAT 870285 Query 77574 TAAGCGG-GTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCG 77632 | || || || |||||||| || ||||||| ||||| |||| || || Sbjct 870286 TTAGAGGATTGGCCTGGCCCCCAATAAACACCAATGCTTGCTCGTGCTTTCCTCCTCCCA 870345 Query 77633 TTTGATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682 || |||| ||||| || || || ||||| | || || |||||||| Sbjct 870346 TTACTGGAGCAGCAGCCATCTGTATAAACCACAGCTGCATCTCCCATGTA 870395 >seq48 Length=16487017 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| |||| || ||||||| ||| ||||| || |||||||| || || ||||| Sbjct 7775705 GGCGAACGTGTTGTAGCTTTTGCAGCTGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 7775764 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||||| ||| | |||||||||||||| |||||||| || || ||||| ||||| | Sbjct 7775765 TCCATATTCTGGCTCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCCAATGAACTT 7775824 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 7775825 ATTAGTAGAGATGA 7775838 Score = 114 bits (126), Expect = 1e-20 Identities = 109/139 (78%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 ||||||| |||||||||||||| ||||| || ||||||| ||||| ||||| ||||| | Sbjct 7780001 AAAACCCATTTGATTTTATGGAGAATATCTCTCTGGAAGGGAAAACCAACTTCTTTGAGA 7780060 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAATTTA 44609 | | || |||||||||||| ||||||| || ||| || ||| ||| ||| |||| Sbjct 7780061 AGAGAGTAGGAGAATATCAGAGAATGGGAGTGATGTCAAGTCCAACTGAGAATTCTTTTA 7780120 Query 44610 CTACGGATGAAGATTTCTA 44628 || ||||| ||| ||||| Sbjct 7780121 CTTTGGATGCAGACTTCTA 7780139 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || || | ||||| || ||||| ||||| ||||||||||| || ||||| Sbjct 7772286 CAAGAAGTACAGATAACGGAAGCTCGCTGTTTCTATGGCTTTCAAATTGCTATGGAAAAC 7772345 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || ||||| |||||||| ||||| || || || || || || || || Sbjct 7772346 ATACATTCTGAAATGTATAGTCTCCTTATTGACACTTATATTAAGGA 7772392 >seq8 Length=27308231 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || |||||||| |||||||||||||| ||||||| |||||||| |||||||||||| Sbjct 9722227 AATCCCTTTGATTTCATGGAAAATATTTCTCTGGAAGGGAAAACAAATTTTTTTGAAAAA 9722168 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTACT 44611 | || |||||| ||||| | | || ||| ||||| |||||| || || Sbjct 9722167 AGGGTCTCAGAATACCAGCGTTTTGCAGTTATGGCAGAAACAACAGACAATGTCTTCACC 9722108 Query 44612 ACGGATGAAGATTTCTAAT 44630 ||||| |||||| |||| Sbjct 9722107 TTGGATGCAGATTTTTAAT 9722089 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||||||||| |||| |||||| ||| ||||||||||| | || ||||| Sbjct 9743491 TTTGTCATTTTTCCAATTCAGTATCCTGACATCTGGAAAATGTACAAACAGGCCCAGGCA 9743432 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || ||||| || ||||| || Sbjct 9743431 TCCTTCTGGACCGCTGAAGAGGT 9743409 >seq19 Length=22461587 Score = 87.8 bits (96), Expect = 1e-12 Identities = 250/380 (66%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 47220 TGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAG-ACAAT 47278 |||| ||||||||||| ||| | ||||| || ||| | | || || |||| | ||||| Sbjct 8220938 TGCAGTTTTTAGGACTCTATAAGAAATCTGGAAAACTTGTGTT-CTTGGGTCTGTACAAT 8220880 Query 47279 GCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCT 47338 ||| | || | | || | |||||||||||| | | | || ||||| || Sbjct 8220879 GCAAAACAACC--CTTT--TGCACATGCTCAAAGATGACAGATTGGGCCAGCATGTTCCA 8220824 Query 47339 ACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGAT 47398 ||| ||||||| || |||||| | || || ||||| || || || |||| || |||||| Sbjct 8220823 ACACTACATCCAACGTCTGAAGAGCTGACGATTGCAGGAATGACTTTTATAACCTTTGAT 8220764 Query 47399 TTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGATGCT 47458 | || |||||| ||||| || | | ||| |||| | ||| | | || ||| Sbjct 8220763 CTTGGTGGACACGAGCAAGCCCGGCGGGTTTGGAAAAACTGTTTACCGGCAATTAATGGA 8220704 Query 47459 ATAGTTTATATTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAATCGAATTC 47518 || || | | || |||||||||||| || | || || | ||| | |||||| Sbjct 8220703 ATTGTCTTCCTGGTGGACTGTGCAGATCATCCTCGCCTCTTGGAATCCAAAGTTGAATTC 8220644 Query 47519 GATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGGCAATAAA 47578 |||| | | | || ||| || | |||| || | | | |||||||||||| Sbjct 8220643 AATGCACTAATGACAGAAGAAACAATATCCAATGTGCCAGTCCTTATTTTGGGCAATAAA 8220584 Query 47579 ATCGACAAACAAAACGCGAT 47598 || |||| | | | ||||| Sbjct 8220583 ATTGACAGATCAGATGCGAT 8220564 >seq68 Length=13225171 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||| ||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 9408841 AACAGTGGTTTACACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGA 9408782 Query 19600 TC--TGG-TGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||| || || ||||| ||||||||||||||||| ||||| |||| ||| | Sbjct 9408781 AGCATGGCTGGAAGCACAGGAGTTCATGACACTGTTGTCAACCAACTGTTGTCTAAAATC 9408722 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || ||||| | ||||| || || || ||||| ||||| ||| Sbjct 9408721 GATGGTGTGGAACAACTAAACAACATCTTAGTCATTGGTATG 9408680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446767345530