Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq36 203 3e-47
seq23 118 8e-22
seq48 116 3e-21
seq8 91.5 1e-13
seq19 87.8 1e-12
seq68 86.0 5e-12
>seq36
Length=18184789
Score = 203 bits (224), Expect = 3e-47
Identities = 449/671 (67%), Gaps = 2/671 (0%)
Strand=Plus/Minus
Query 40684 GAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAAC 40743
|| || ||||||| ||||| || || || |||| ||||| || | || || |
Sbjct 7686518 GAGATGAGTTTCCTTTGCTGACAACCAAGCGTGTGTTCTGGAAGGGTGTGCTGGAGGAGC 7686459
Query 40744 TGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACA 40803
|| | |||||||| || |||| || ||||||||| | | || | | |||||| | |
Sbjct 7686458 TGCTGTGGTTTATTAAGGGTTCCACAAATGCTAAGGAGCTCTCTGCCAAAGGAGTAAAAA 7686399
Query 40804 TTTGGAATGCGCACAGTTCTAAA-ACATATTTGTCTAGCATAGGATTACAAGATAGGGAT 40862
| ||| | || | | ||| | || | || | | |||| || | || | || ||
Sbjct 7686398 TCTGGGACGCCAATGGATCTCGAGACTTTTTGGACAAGCAGGGGTTCACTACC-AGAGAG 7686340
Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922
||||| ||| | || || || ||||| || |||| | |||||||||| ||| |||| |
Sbjct 7686339 GAAGGAGATTTGGGACCAGTGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAA 7686280
Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982
||| | | |||||| | ||||| |||||||| |||| || || || ||
Sbjct 7686279 GAGATGAATACAGATTATTCTGGACAAGGAGTGGATCAACTACAAAAAGTCATTGACACA 7686220
Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042
|| ||| || |||| || | || | || || |||| || ||||| || | || |
Sbjct 7686219 ATCAAAACCAATCCTCATGACAGAAGGATCATTATGTGTGCTTGGAATCCTAAAGATCTT 7686160
Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAA 41102
| | |||||||||| || || || || | |||||||| || || | ||||||||
Sbjct 7686159 CCTCTGATGGCATTACCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAATGGTGAG 7686100
Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162
|| || ||||| | || || |||| || || ||||| || ||||| ||||| |||||
Sbjct 7686099 CTTTCTTGTCAGCTATACCAGCGATCTGGAGATATGGGCCTTGGGGTGCCGTTCAACATT 7686040
Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222
|| ||||| | ||||| || || |||||||| || || || | || || |||||
Sbjct 7686039 GCCAGTTACTCCCTGCTAACCTACATGATTGCTCATGTCACAGGCCTGAAGCCAGGTGAT 7685980
Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAA 41282
||||| ||||| | ||||||| ||||| ||| | ||||| || | ||| | | |
Sbjct 7685979 TTTGTACACACTCTGGGAGATGCTCATATATACTTGAATCATATTGGGCCACTGAAAATT 7685920
Query 41283 CAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAAC 41342
|| || ||| |||| ||||| || || | ||| ||| || | || || |
Sbjct 7685919 CAGCTTCAGCGAGAACCAAGACCTTTCCCTAAGCTCAGAATTCTTCGAGAAGTCAAAGCC 7685860
Query 41343 ATTGATGATTT 41353
|||||||||||
Sbjct 7685859 ATTGATGATTT 7685849
>seq23
Length=22081990
Score = 118 bits (130), Expect = 8e-22
Identities = 201/290 (69%), Gaps = 1/290 (0%)
Strand=Plus/Plus
Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453
||||||| || | |||||||| |||||||| | || | |||||| || || ||||| |
Sbjct 870106 TCCAGCCATTTTTCTTCCAGTCTTTAACCCAACTTGTTATACCATTTATAGTAAACATAC 870165
Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGG 77513
|||||||| ||| |||||||| ||| || | | || ||||||| ||||||
Sbjct 870166 TGTCTGTGCAGAGAACCAGCTTACAGATGTTTTGATTCTTGGCTTGTTCTGCTGCTTTAC 870225
Query 77514 ATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACAT 77573
| ||||| || ||||| || | |||||||||||| ||| ||||| || ||||
Sbjct 870226 AGGCAGCATGTATTTCTGCTCTTTGGTTTGTCTGTCACCCAGGAAGTCTATCACTCACAT 870285
Query 77574 TAAGCGG-GTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCG 77632
| || || || |||||||| || ||||||| ||||| |||| || ||
Sbjct 870286 TTAGAGGATTGGCCTGGCCCCCAATAAACACCAATGCTTGCTCGTGCTTTCCTCCTCCCA 870345
Query 77633 TTTGATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682
|| |||| ||||| || || || ||||| | || || ||||||||
Sbjct 870346 TTACTGGAGCAGCAGCCATCTGTATAAACCACAGCTGCATCTCCCATGTA 870395
>seq48
Length=16487017
Score = 116 bits (128), Expect = 3e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|| ||||| |||| || ||||||| ||| ||||| || |||||||| || || |||||
Sbjct 7775705 GGCGAACGTGTTGTAGCTTTTGCAGCTGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 7775764
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
||||||| ||| | |||||||||||||| |||||||| || || ||||| ||||| |
Sbjct 7775765 TCCATATTCTGGCTCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCCAATGAACTT 7775824
Query 44243 ATAAGTCGTGATGA 44256
|| ||| | |||||
Sbjct 7775825 ATTAGTAGAGATGA 7775838
Score = 114 bits (126), Expect = 1e-20
Identities = 109/139 (78%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
||||||| |||||||||||||| ||||| || ||||||| ||||| ||||| ||||| |
Sbjct 7780001 AAAACCCATTTGATTTTATGGAGAATATCTCTCTGGAAGGGAAAACCAACTTCTTTGAGA 7780060
Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAATTTA 44609
| | || |||||||||||| ||||||| || ||| || ||| ||| ||| ||||
Sbjct 7780061 AGAGAGTAGGAGAATATCAGAGAATGGGAGTGATGTCAAGTCCAACTGAGAATTCTTTTA 7780120
Query 44610 CTACGGATGAAGATTTCTA 44628
|| ||||| ||| |||||
Sbjct 7780121 CTTTGGATGCAGACTTCTA 7780139
Score = 89.7 bits (98), Expect = 4e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|||||||| || || | ||||| || ||||| ||||| ||||||||||| || |||||
Sbjct 7772286 CAAGAAGTACAGATAACGGAAGCTCGCTGTTTCTATGGCTTTCAAATTGCTATGGAAAAC 7772345
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019
|| ||||| |||||||| ||||| || || || || || || || ||
Sbjct 7772346 ATACATTCTGAAATGTATAGTCTCCTTATTGACACTTATATTAAGGA 7772392
>seq8
Length=27308231
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/139 (75%), Gaps = 3/139 (2%)
Strand=Plus/Minus
Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554
|| || |||||||| |||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 9722227 AATCCCTTTGATTTCATGGAAAATATTTCTCTGGAAGGGAAAACAAATTTTTTTGAAAAA 9722168
Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTACT 44611
| || |||||| ||||| | | || ||| ||||| |||||| || ||
Sbjct 9722167 AGGGTCTCAGAATACCAGCGTTTTGCAGTTATGGCAGAAACAACAGACAATGTCTTCACC 9722108
Query 44612 ACGGATGAAGATTTCTAAT 44630
||||| |||||| ||||
Sbjct 9722107 TTGGATGCAGATTTTTAAT 9722089
Score = 82.4 bits (90), Expect = 6e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | ||||||||||| |||| |||||| ||| ||||||||||| | || |||||
Sbjct 9743491 TTTGTCATTTTTCCAATTCAGTATCCTGACATCTGGAAAATGTACAAACAGGCCCAGGCA 9743432
Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782
|| || ||||| || ||||| ||
Sbjct 9743431 TCCTTCTGGACCGCTGAAGAGGT 9743409
>seq19
Length=22461587
Score = 87.8 bits (96), Expect = 1e-12
Identities = 250/380 (66%), Gaps = 6/380 (2%)
Strand=Plus/Minus
Query 47220 TGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAG-ACAAT 47278
|||| ||||||||||| ||| | ||||| || ||| | | || || |||| | |||||
Sbjct 8220938 TGCAGTTTTTAGGACTCTATAAGAAATCTGGAAAACTTGTGTT-CTTGGGTCTGTACAAT 8220880
Query 47279 GCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCT 47338
||| | || | | || | |||||||||||| | | | || ||||| ||
Sbjct 8220879 GCAAAACAACC--CTTT--TGCACATGCTCAAAGATGACAGATTGGGCCAGCATGTTCCA 8220824
Query 47339 ACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGAT 47398
||| ||||||| || |||||| | || || ||||| || || || |||| || ||||||
Sbjct 8220823 ACACTACATCCAACGTCTGAAGAGCTGACGATTGCAGGAATGACTTTTATAACCTTTGAT 8220764
Query 47399 TTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGATGCT 47458
| || |||||| ||||| || | | ||| |||| | ||| | | || |||
Sbjct 8220763 CTTGGTGGACACGAGCAAGCCCGGCGGGTTTGGAAAAACTGTTTACCGGCAATTAATGGA 8220704
Query 47459 ATAGTTTATATTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAATCGAATTC 47518
|| || | | || |||||||||||| || | || || | ||| | ||||||
Sbjct 8220703 ATTGTCTTCCTGGTGGACTGTGCAGATCATCCTCGCCTCTTGGAATCCAAAGTTGAATTC 8220644
Query 47519 GATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGGCAATAAA 47578
|||| | | | || ||| || | |||| || | | | ||||||||||||
Sbjct 8220643 AATGCACTAATGACAGAAGAAACAATATCCAATGTGCCAGTCCTTATTTTGGGCAATAAA 8220584
Query 47579 ATCGACAAACAAAACGCGAT 47598
|| |||| | | | |||||
Sbjct 8220583 ATTGACAGATCAGATGCGAT 8220564
>seq68
Length=13225171
Score = 86.0 bits (94), Expect = 5e-12
Identities = 118/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| ||| ||||| || || | |||||| | || || ||||| ||||| |||||
Sbjct 9408841 AACAGTGGTTTACACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGA 9408782
Query 19600 TC--TGG-TGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
||| || || ||||| ||||||||||||||||| ||||| |||| ||| |
Sbjct 9408781 AGCATGGCTGGAAGCACAGGAGTTCATGACACTGTTGTCAACCAACTGTTGTCTAAAATC 9408722
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
|| ||||| | ||||| || || || ||||| ||||| |||
Sbjct 9408721 GATGGTGTGGAACAACTAAACAACATCTTAGTCATTGGTATG 9408680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397446767345530
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |