Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq85 111 1e-19 seq65 98.7 8e-16 >seq85 Length=11587828 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| |||| || || ||||| || ||| |||||||| | | || | Sbjct 256587 CGCAGCACCAAGTGTAGAGTGGACTCTTTCTGGATAATGTAGTCGGAGAGAGTTCGGCCA 256528 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| |||||||| || || |||| ||||| | ||||| || || | ||| || || Sbjct 256527 TCTTCTAGCTGTTTTCCAGCAAAAATCAGACGTTACTGATCTGGTGGGATACCTTCCTTT 256468 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| ||| | | || | ||| || ||| |||||| || ||||| ||| Sbjct 256467 TCCTGGATTTTGGCTTTGACATTCTCGATAGTATCACTGGGTTCAACCTCAAGAGTGATA 256408 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | ||||| ||||| || ||||||||||| ||||| |||| Sbjct 256407 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 256367 >seq65 Length=13810318 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC-ATGTTGCGCTCGTCTTC 27097 ||||| || | || || ||||| || || ||||||||| | ||| || | ||||| Sbjct 5575234 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGGAAGTTCGGC-CATCTTC 5575292 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||| || || |||| |||| |||||||| || || | ||| || || || Sbjct 5575293 TAGCTGTTTTCCAGCAAAAATCGGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCCTG 5575352 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| ||| ||| | | || | ||| || ||| |||||| || ||||| || | || Sbjct 5575353 GATTTTGGCTTTGACATTCTCGATAGTATCACTGGGTTCAACCTCAAGAGTGATGGTCTT 5575412 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 || |||||| || ||||||||||| |||| |||| Sbjct 5575413 GCTCGTCAGGGTCTTCACAAAGATCCGCATCTCTGC 5575448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424924529039472