Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_028099.1
Length=122522
Score E
Sequences producing significant alignments: (Bits) Value
seq36 192 5e-44
seq208 116 3e-21
>seq36
Length=18184789
Score = 192 bits (212), Expect = 5e-44
Identities = 487/727 (67%), Gaps = 19/727 (3%)
Strand=Plus/Plus
Query 111574 TCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAATTCA--AAGTCATCAGCAACAA 111631
||||| || ||||| || ||||| |||| | || |||| || ||||| ||||| |
Sbjct 7685792 TCCATTTTAATAGCTGGGTGAGGGTTATAGT-CTTCAAT-CAGGAAGTCCTCAGCCTTGA 7685849
Query 111632 AATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTC 111691
|||| |||||| ||| ||| |||| | || || || || || | || | ||
Sbjct 7685850 AATCATCAATGGCTTTGACTTCTCGAAGAATTCTGAGCTTAGGGAAAGGTCTTGGTTCTC 7685909
Query 111692 GGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATAC 111751
| |||||| | || | ||| || ||||| || || | ||| |||||||| | |
Sbjct 7685910 GCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATATATGAGCATCTCCCAGAG 7685969
Query 111752 AATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGAC 111811
|| | || || | |||| || || |||| || ||||||||||| || || ||
Sbjct 7685970 TGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATCATGTAGGTTAGCAGGG 7686029
Query 111812 TGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCT 111871
|||||| |||||||| || ||||| || |||||||||||||| |||| || |||||||
Sbjct 7686030 AGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCAGATCGCTGGTATAGCT 7686089
Query 111872 GACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATG 111931
|||| || || | | | | ||||| || ||||| || | || || ||||| ||||
Sbjct 7686090 GACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCGTGGCATGGAGGTAATG 7686149
Query 111932 CCATCCCATTCA----TAAAGGGTCCCCATGCACACATGATCATCCTTCTGCTGTAGCGA 111987
||||| | | | ||| | ||| |||||||| || ||||||||| | ||
Sbjct 7686150 CCATCAGAGGAAGATCTTTAGGAT-TCCAAGCACACATAATGATCCTTCTGTCATGAGGA 7686208
Query 111988 TT-ATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATC 112046
|| | || | ||| || ||||| || || || || | |||| |||| ||||||
Sbjct 7686209 TTGGTTTTGATTGT-GTCAATGACTTTTTGTAGTTGATCCACTCCTTGTCCAGAATAATC 7686267
Query 112047 CGCCTGACATC-CAGTGTATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCC 112105
| | |||| | ||||| ||||||| | |||||||| ||||| ||||| | || |
Sbjct 7686268 TGTAT-TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTC 7686326
Query 112106 CCAGATCTCCCGGGGCTGTATCTGGAAATTGCTCTCTATTCAACAAATCACTTCTA-AT- 112163
||| |||||| || | | || || | | ||| || || || | ||
Sbjct 7686327 CCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTC---TCGAGATC 7686383
Query 112164 -ATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTC 112222
|| | | ||| || || |||||||| | || | ||| | ||||||||||| ||
Sbjct 7686384 CATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACCCT 7686443
Query 112223 TAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCA 112282
|||||||||| |||| || |||| || || |||||| |||| | || || || ||||
Sbjct 7686444 TAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACGCTTGGTTGTCAGCA 7686503
Query 112283 GTGGAAA 112289
|||||
Sbjct 7686504 AAGGAAA 7686510
>seq208
Length=5466430
Score = 116 bits (128), Expect = 3e-21
Identities = 121/159 (76%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837
|| |||||||| ||||||||||| || || || |||||| || ||||| || |||||
Sbjct 1463611 CCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGCACT 1463552
Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897
|| |||||||||||||| |||| || ||||||||||| || || | | | | |||
Sbjct 1463551 CCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACA 1463492
Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936
|| || ||||| || | || || ||||||| |||||||
Sbjct 1463491 TAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATC 1463453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 391936495348678
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |