Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq36 192 5e-44 seq208 116 3e-21 >seq36 Length=18184789 Score = 192 bits (212), Expect = 5e-44 Identities = 487/727 (67%), Gaps = 19/727 (3%) Strand=Plus/Plus Query 111574 TCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAATTCA--AAGTCATCAGCAACAA 111631 ||||| || ||||| || ||||| |||| | || |||| || ||||| ||||| | Sbjct 7685792 TCCATTTTAATAGCTGGGTGAGGGTTATAGT-CTTCAAT-CAGGAAGTCCTCAGCCTTGA 7685849 Query 111632 AATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTC 111691 |||| |||||| ||| ||| |||| | || || || || || | || | || Sbjct 7685850 AATCATCAATGGCTTTGACTTCTCGAAGAATTCTGAGCTTAGGGAAAGGTCTTGGTTCTC 7685909 Query 111692 GGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATAC 111751 | |||||| | || | ||| || ||||| || || | ||| |||||||| | | Sbjct 7685910 GCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATATATGAGCATCTCCCAGAG 7685969 Query 111752 AATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGAC 111811 || | || || | |||| || || |||| || ||||||||||| || || || Sbjct 7685970 TGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATCATGTAGGTTAGCAGGG 7686029 Query 111812 TGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCT 111871 |||||| |||||||| || ||||| || |||||||||||||| |||| || ||||||| Sbjct 7686030 AGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCAGATCGCTGGTATAGCT 7686089 Query 111872 GACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATG 111931 |||| || || | | | | ||||| || ||||| || | || || ||||| |||| Sbjct 7686090 GACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCGTGGCATGGAGGTAATG 7686149 Query 111932 CCATCCCATTCA----TAAAGGGTCCCCATGCACACATGATCATCCTTCTGCTGTAGCGA 111987 ||||| | | | ||| | ||| |||||||| || ||||||||| | || Sbjct 7686150 CCATCAGAGGAAGATCTTTAGGAT-TCCAAGCACACATAATGATCCTTCTGTCATGAGGA 7686208 Query 111988 TT-ATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATC 112046 || | || | ||| || ||||| || || || || | |||| |||| |||||| Sbjct 7686209 TTGGTTTTGATTGT-GTCAATGACTTTTTGTAGTTGATCCACTCCTTGTCCAGAATAATC 7686267 Query 112047 CGCCTGACATC-CAGTGTATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCC 112105 | | |||| | ||||| ||||||| | |||||||| ||||| ||||| | || | Sbjct 7686268 TGTAT-TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTC 7686326 Query 112106 CCAGATCTCCCGGGGCTGTATCTGGAAATTGCTCTCTATTCAACAAATCACTTCTA-AT- 112163 ||| |||||| || | | || || | | ||| || || || | || Sbjct 7686327 CCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTC---TCGAGATC 7686383 Query 112164 -ATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTC 112222 || | | ||| || || |||||||| | || | ||| | ||||||||||| || Sbjct 7686384 CATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACCCT 7686443 Query 112223 TAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCA 112282 |||||||||| |||| || |||| || || |||||| |||| | || || || |||| Sbjct 7686444 TAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACGCTTGGTTGTCAGCA 7686503 Query 112283 GTGGAAA 112289 ||||| Sbjct 7686504 AAGGAAA 7686510 >seq208 Length=5466430 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||| ||||||||||| || || || |||||| || ||||| || ||||| Sbjct 1463611 CCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGCACT 1463552 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || |||||||||||||| |||| || ||||||||||| || || | | | | ||| Sbjct 1463551 CCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACA 1463492 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || ||||| || | || || ||||||| ||||||| Sbjct 1463491 TAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATC 1463453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391936495348678