Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq68 100 3e-16 >seq68 Length=13225171 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | ||| || | |||||||| || ||||| || |||||||| Sbjct 1069493 GTAAAGATGTATCGAGGGCTAGCAGAGTCCTTGCCCCCATGCAGCCTGGTACCAAACTGA 1069434 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||||||||| |||||| |||||| ||||| ||||||||||| | | Sbjct 1069433 CCAATGGGCTGCAAGAGGTTGAGATTGTTGCTGCCCACAAAATTTTGAGCCAAATTAATA 1069374 Query 152149 ATCGT 152153 || || Sbjct 1069373 ATGGT 1069369 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || ||||| |||| ||| |||| |||||||| ||| || | ||||| || || Sbjct 1069493 GTAAAGATGTATCGAGGGCTAGCAGAGTCCTTGCCCCCATGCAGCCTGGTACCAAACTGA 1069434 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||| || |||||| ||||||||| ||||||||||| || | | Sbjct 1069433 CCAATGGGCTGCAAGAGGTTGAGATTGTTGCTGCCCACAAAATTTTGAGCCAAATTAATA 1069374 Query 117425 ATCGT 117429 || || Sbjct 1069373 ATGGT 1069369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202962578800