Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq36 381 5e-101 seq208 134 1e-26 >seq36 Length=18184789 Score = 381 bits (422), Expect = 5e-101 Identities = 501/690 (73%), Gaps = 7/690 (1%) Strand=Plus/Plus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 |||||||| ||| || || | || |||||| | ||||| || | | | || || ||| Sbjct 7685891 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTA 7685949 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958 | ||||| |||||||| |||| ||||| || || || | || || ||||| ||||| Sbjct 7685950 TATATGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGC 7686009 Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018 |||||||| || || || ||||| ||||| ||||| || || ||||| || ||||| || Sbjct 7686010 AATCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATC 7686069 Query 30019 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30078 || || | |||||| |||||||| || ||||| || | || || |||||||| | Sbjct 7686070 TCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAG 7686129 Query 30079 GGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACAC 30135 |||||||| ||||| | ||||| |||| ||| ||||| || ||||| || |||| Sbjct 7686130 AGCGTGGCATGGAGGTAATGCCATCAGAGG---AAGATCTTTAGGATTCCAAGCACACAT 7686186 Query 30136 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 30195 ||||| | ||||| | || ||| | |||| ||| | | | ||||| || ||||| Sbjct 7686187 AATGATCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATC 7686246 Query 30196 CACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 30255 ||| || || || || |||| |||| || |||| ||||| || ||||| ||||| Sbjct 7686247 CACTCCTTGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCA 7686306 Query 30256 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30315 |||||| || ||||| ||||||| ||||| || || ||| ||| ||| |||||| Sbjct 7686307 CTGGAAGCCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTC 7686366 Query 30316 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTT 30375 ||||||||||| || || |||||||||||||| ||||| || || |||||||||| || Sbjct 7686367 CAAAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTT 7686426 Query 30376 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30435 | |||||||| || | | ||||||||||||||||||| || ||||||| || || Sbjct 7686427 AGCATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACAC 7686486 Query 30436 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAA 30495 | |||||| || || | ||||||| | |||| ||| | ||| || | ||||| Sbjct 7686487 ACGCTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAA 7686546 Query 30496 CACGGACAAGACTCCCGTGCCCGTCCTGTC 30525 ||| |||| | || |||||||| | ||| Sbjct 7686547 CACAGACACGGTGCCGGTGCCCGTGCGGTC 7686576 >seq208 Length=5466430 Score = 134 bits (148), Expect = 1e-26 Identities = 131/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || |||| ||||| || ||||| ||||||||||| || || || ||||||| | Sbjct 1460261 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATATACAGGTCCCAAAT 1460202 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| || || ||| ||| ||| ||||||||||||||||| || || ||||||| Sbjct 1460201 CTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCGT 1460142 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||| ||||| || || |||||||||| || | |||||||| || Sbjct 1460141 CCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACC 1460093 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || |||| |||||| |||||||| || || || ||||| ||||||||||| || || Sbjct 1463615 TAGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGG 1463556 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060 || ||||| ||||| || || || | |||||| |||||||| || ||||| || | Sbjct 1463555 CACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAA 1463496 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || |||||||| | |||||||| ||||| || ||||| || Sbjct 1463495 TACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATCAG 1463451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406300961663352