Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq36 381 5e-101
seq208 134 1e-26
>seq36
Length=18184789
Score = 381 bits (422), Expect = 5e-101
Identities = 501/690 (73%), Gaps = 7/690 (1%)
Strand=Plus/Plus
Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898
|||||||| ||| || || | || |||||| | ||||| || | | | || || |||
Sbjct 7685891 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTA 7685949
Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958
| ||||| |||||||| |||| ||||| || || || | || || ||||| |||||
Sbjct 7685950 TATATGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGC 7686009
Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018
|||||||| || || || ||||| ||||| ||||| || || ||||| || ||||| ||
Sbjct 7686010 AATCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATC 7686069
Query 30019 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30078
|| || | |||||| |||||||| || ||||| || | || || |||||||| |
Sbjct 7686070 TCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAG 7686129
Query 30079 GGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACAC 30135
|||||||| ||||| | ||||| |||| ||| ||||| || ||||| || ||||
Sbjct 7686130 AGCGTGGCATGGAGGTAATGCCATCAGAGG---AAGATCTTTAGGATTCCAAGCACACAT 7686186
Query 30136 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 30195
||||| | ||||| | || ||| | |||| ||| | | | ||||| || |||||
Sbjct 7686187 AATGATCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATC 7686246
Query 30196 CACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 30255
||| || || || || |||| |||| || |||| ||||| || ||||| |||||
Sbjct 7686247 CACTCCTTGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCA 7686306
Query 30256 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30315
|||||| || ||||| ||||||| ||||| || || ||| ||| ||| ||||||
Sbjct 7686307 CTGGAAGCCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTC 7686366
Query 30316 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTT 30375
||||||||||| || || |||||||||||||| ||||| || || |||||||||| ||
Sbjct 7686367 CAAAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTT 7686426
Query 30376 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30435
| |||||||| || | | ||||||||||||||||||| || ||||||| || ||
Sbjct 7686427 AGCATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACAC 7686486
Query 30436 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAA 30495
| |||||| || || | ||||||| | |||| ||| | ||| || | |||||
Sbjct 7686487 ACGCTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAA 7686546
Query 30496 CACGGACAAGACTCCCGTGCCCGTCCTGTC 30525
||| |||| | || |||||||| | |||
Sbjct 7686547 CACAGACACGGTGCCGGTGCCCGTGCGGTC 7686576
>seq208
Length=5466430
Score = 134 bits (148), Expect = 1e-26
Identities = 131/169 (78%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281
|||| || |||| ||||| || ||||| ||||||||||| || || || ||||||| |
Sbjct 1460261 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATATACAGGTCCCAAAT 1460202
Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341
|||| || || ||| ||| ||| ||||||||||||||||| || || |||||||
Sbjct 1460201 CTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCGT 1460142
Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
||||||| ||||| || || |||||||||| || | |||||||| ||
Sbjct 1460141 CCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACC 1460093
Score = 127 bits (140), Expect = 2e-24
Identities = 127/165 (77%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000
||| || |||| |||||| |||||||| || || || ||||| ||||||||||| || ||
Sbjct 1463615 TAGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGG 1463556
Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060
|| ||||| ||||| || || || | |||||| |||||||| || ||||| || |
Sbjct 1463555 CACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAA 1463496
Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
|| || |||||||| | |||||||| ||||| || ||||| ||
Sbjct 1463495 TACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATCAG 1463451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406300961663352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |