Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq103 107 1e-18 seq118 89.7 3e-13 >seq103 Length=10584223 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || || ||| ||| || || ||||| || || || Sbjct 9901277 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9901218 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || || | ||| ||||| || || Sbjct 9901217 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9901158 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||||||| | || || | ||| ||||| | |||||| Sbjct 9901157 ATGCCTTCTTTGTCTTGGATCTTT-GCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 9901099 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || || || ||||| || |||||||| Sbjct 9901098 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901051 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || || ||| || || || ||||| || || || Sbjct 9900594 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGA-TCTTTCTGGATGTTGTAGTCAGAC 9900536 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || || | ||| ||||| || || Sbjct 9900535 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9900476 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||||||| | || || | ||| ||||| | |||||| Sbjct 9900475 ATGCCTTCTTTGTCTTGGATCTTT-GCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 9900417 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || || || ||||| || |||||||| Sbjct 9900416 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900369 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||| ||||| || |||||| || || || ||||| || || || || || || | Sbjct 9901489 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA 9901430 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| || || || |||||||| || || | ||| ||||| || || | || || ||| Sbjct 9901429 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCTTTG 9901370 Query 34612 TCTGTGATCTTTTGTT-TTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 ||| ||||||||| || | ||| ||||| | ||||||||||| ||| || Sbjct 9901369 TCTTGGATCTTTTGACATTCTC-----AATGGTGTCACTGGGCTCCACTTCCAGGGTGAT 9901315 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || ||||| || |||||||| Sbjct 9901314 GGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279 >seq118 Length=9585089 Score = 89.7 bits (98), Expect = 3e-13 Identities = 168/244 (69%), Gaps = 11/244 (5%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 4426506 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4426447 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 4426446 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4426387 Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653 | ||||||||||| |||||| ||| || ||||| ||||| | | Sbjct 4426386 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4426332 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT- 34712 ||||| |||| ||| || || || || || | || |||||||| |||||||| |||| Sbjct 4426331 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTGTGATC 4426272 Query 34713 TGTA 34716 |||| Sbjct 4426271 TGTA 4426268 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/234 (69%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 4426960 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4426901 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 4426900 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4426841 Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653 | ||||||||||| |||||| ||| || ||||| ||||| | | Sbjct 4426840 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4426786 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 4426785 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4426732 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/234 (69%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 4427870 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4427811 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 4427810 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4427751 Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653 | ||||||||||| |||||| ||| || ||||| ||||| | | Sbjct 4427750 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4427696 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 4427695 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4427642 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/234 (69%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 4428781 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4428722 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 4428721 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4428662 Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653 | ||||||||||| |||||| ||| || ||||| ||||| | | Sbjct 4428661 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4428607 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 4428606 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4428553 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/234 (69%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 4429009 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4428950 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 4428949 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4428890 Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653 | ||||||||||| |||||| ||| || ||||| ||||| | | Sbjct 4428889 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4428835 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 4428834 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4428781 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/234 (69%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 4429918 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4429859 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 4429858 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4429799 Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653 | ||||||||||| |||||| ||| || ||||| ||||| | | Sbjct 4429798 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4429744 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 4429743 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4429690 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/234 (69%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 4430372 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4430313 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 4430312 CAGAGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4430253 Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653 | ||||||||||| |||||| ||| || ||||| ||||| | | Sbjct 4430252 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4430198 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 4430197 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4430144 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 11/234 (5%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 4427642 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4427583 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 4427582 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4427523 Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653 | ||||||||||| |||||| ||| || ||||| ||||| | | Sbjct 4427522 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4427468 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 4427467 TCCACCTCCAAGGTGATGGTCTTGCC-GTCAGGGTCTTCACAAAGATCTGCATG 4427415 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 11/234 (5%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 4428326 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4428267 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 4428266 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4428207 Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653 | ||||||||||| |||||| ||| || ||||| ||||| | | Sbjct 4428206 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4428152 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| |||| ||| || || || || | | | || |||||||| ||||||||| Sbjct 4428151 TCCACCTCCAAGGTGATGGTCTTGCCCG-TCAGGTCTTCACAAAGATCTGCATG 4428099 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/234 (68%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || || | |||| || || ||| |||||| || ||||| || || || Sbjct 4429690 GCCACCCCTCAGGCGTAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4429631 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 4429630 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4429571 Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653 | ||||||||||| |||||| ||| || ||||| ||||| | | Sbjct 4429570 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4429516 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 4429515 TCCACCTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 4429462 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/235 (69%), Gaps = 11/235 (5%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAA-TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||| || || || |||| ||| | || || ||| |||||| || ||||| || || | Sbjct 4428099 GCCACCCCTCAGGCGCAGGACCCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 4428040 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || |||| | ||||| || || || || ||||| || | | ||| ||||| || | Sbjct 4428039 ACAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 4427980 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCT 34652 | | ||||||||||| |||||| ||| || ||||| ||||| | Sbjct 4427979 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGG 4427925 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||| |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 4427924 CTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4427870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722289028098