Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq103 107 1e-18
seq118 89.7 3e-13
>seq103
Length=10584223
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||| || || ||| ||| || || ||||| || || ||
Sbjct 9901277 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9901218
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| || || || |||||||| || || | ||| ||||| || ||
Sbjct 9901217 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9901158
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || || |||||| ||||||| | || || | ||| ||||| | ||||||
Sbjct 9901157 ATGCCTTCTTTGTCTTGGATCTTT-GCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 9901099
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| ||| || || || || || || || ||||| || ||||||||
Sbjct 9901098 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901051
Score = 98.7 bits (108), Expect = 6e-16
Identities = 161/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||| || || ||| || || || ||||| || || ||
Sbjct 9900594 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGA-TCTTTCTGGATGTTGTAGTCAGAC 9900536
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| || || || |||||||| || || | ||| ||||| || ||
Sbjct 9900535 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9900476
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || || |||||| ||||||| | || || | ||| ||||| | ||||||
Sbjct 9900475 ATGCCTTCTTTGTCTTGGATCTTT-GCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 9900417
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| ||| || || || || || || || ||||| || ||||||||
Sbjct 9900416 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900369
Score = 98.7 bits (108), Expect = 6e-16
Identities = 152/216 (70%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551
|||| ||||| || |||||| || || || ||||| || || || || || || |
Sbjct 9901489 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA 9901430
Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611
||||| || || || |||||||| || || | ||| ||||| || || | || || |||
Sbjct 9901429 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCTTTG 9901370
Query 34612 TCTGTGATCTTTTGTT-TTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670
||| ||||||||| || | ||| ||||| | ||||||||||| ||| ||
Sbjct 9901369 TCTTGGATCTTTTGACATTCTC-----AATGGTGTCACTGGGCTCCACTTCCAGGGTGAT 9901315
Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || || ||||| || ||||||||
Sbjct 9901314 GGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279
>seq118
Length=9585089
Score = 89.7 bits (98), Expect = 3e-13
Identities = 168/244 (69%), Gaps = 11/244 (5%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || || |||| |||| || || ||| |||||| || ||||| || || ||
Sbjct 4426506 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4426447
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| |||| | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 4426446 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4426387
Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653
| ||||||||||| |||||| ||| || ||||| ||||| | |
Sbjct 4426386 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4426332
Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT- 34712
||||| |||| ||| || || || || || | || |||||||| |||||||| ||||
Sbjct 4426331 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTGTGATC 4426272
Query 34713 TGTA 34716
||||
Sbjct 4426271 TGTA 4426268
Score = 89.7 bits (98), Expect = 3e-13
Identities = 161/234 (69%), Gaps = 10/234 (4%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || || |||| |||| || || ||| |||||| || ||||| || || ||
Sbjct 4426960 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4426901
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| |||| | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 4426900 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4426841
Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653
| ||||||||||| |||||| ||| || ||||| ||||| | |
Sbjct 4426840 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4426786
Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| |||| ||| || || || || || | || |||||||| |||||||||
Sbjct 4426785 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4426732
Score = 89.7 bits (98), Expect = 3e-13
Identities = 161/234 (69%), Gaps = 10/234 (4%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || || |||| |||| || || ||| |||||| || ||||| || || ||
Sbjct 4427870 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4427811
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| |||| | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 4427810 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4427751
Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653
| ||||||||||| |||||| ||| || ||||| ||||| | |
Sbjct 4427750 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4427696
Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| |||| ||| || || || || || | || |||||||| |||||||||
Sbjct 4427695 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4427642
Score = 89.7 bits (98), Expect = 3e-13
Identities = 161/234 (69%), Gaps = 10/234 (4%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || || |||| |||| || || ||| |||||| || ||||| || || ||
Sbjct 4428781 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4428722
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| |||| | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 4428721 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4428662
Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653
| ||||||||||| |||||| ||| || ||||| ||||| | |
Sbjct 4428661 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4428607
Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| |||| ||| || || || || || | || |||||||| |||||||||
Sbjct 4428606 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4428553
Score = 89.7 bits (98), Expect = 3e-13
Identities = 161/234 (69%), Gaps = 10/234 (4%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || || |||| |||| || || ||| |||||| || ||||| || || ||
Sbjct 4429009 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4428950
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| |||| | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 4428949 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4428890
Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653
| ||||||||||| |||||| ||| || ||||| ||||| | |
Sbjct 4428889 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4428835
Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| |||| ||| || || || || || | || |||||||| |||||||||
Sbjct 4428834 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4428781
Score = 89.7 bits (98), Expect = 3e-13
Identities = 161/234 (69%), Gaps = 10/234 (4%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || || |||| |||| || || ||| |||||| || ||||| || || ||
Sbjct 4429918 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4429859
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| |||| | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 4429858 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4429799
Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653
| ||||||||||| |||||| ||| || ||||| ||||| | |
Sbjct 4429798 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4429744
Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| |||| ||| || || || || || | || |||||||| |||||||||
Sbjct 4429743 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4429690
Score = 89.7 bits (98), Expect = 3e-13
Identities = 161/234 (69%), Gaps = 10/234 (4%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || || |||| |||| || || ||| |||||| || ||||| || || ||
Sbjct 4430372 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4430313
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| |||| | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 4430312 CAGAGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4430253
Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653
| ||||||||||| |||||| ||| || ||||| ||||| | |
Sbjct 4430252 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4430198
Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| |||| ||| || || || || || | || |||||||| |||||||||
Sbjct 4430197 TCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4430144
Score = 86.0 bits (94), Expect = 4e-12
Identities = 161/234 (69%), Gaps = 11/234 (5%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || || |||| |||| || || ||| |||||| || ||||| || || ||
Sbjct 4427642 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4427583
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| |||| | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 4427582 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4427523
Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653
| ||||||||||| |||||| ||| || ||||| ||||| | |
Sbjct 4427522 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4427468
Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| |||| ||| || || || || || | || |||||||| |||||||||
Sbjct 4427467 TCCACCTCCAAGGTGATGGTCTTGCC-GTCAGGGTCTTCACAAAGATCTGCATG 4427415
Score = 86.0 bits (94), Expect = 4e-12
Identities = 161/234 (69%), Gaps = 11/234 (5%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || || |||| |||| || || ||| |||||| || ||||| || || ||
Sbjct 4428326 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4428267
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| |||| | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 4428266 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4428207
Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653
| ||||||||||| |||||| ||| || ||||| ||||| | |
Sbjct 4428206 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4428152
Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| |||| ||| || || || || | | | || |||||||| |||||||||
Sbjct 4428151 TCCACCTCCAAGGTGATGGTCTTGCCCG-TCAGGTCTTCACAAAGATCTGCATG 4428099
Score = 84.2 bits (92), Expect = 1e-11
Identities = 160/234 (68%), Gaps = 10/234 (4%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || || || | |||| || || ||| |||||| || ||||| || || ||
Sbjct 4429690 GCCACCCCTCAGGCGTAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4429631
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| |||| | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 4429630 CAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 4429571
Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653
| ||||||||||| |||||| ||| || ||||| ||||| | |
Sbjct 4429570 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGGC 4429516
Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| |||| ||| || || || || || | || |||||||| |||||||||
Sbjct 4429515 TCCACCTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 4429462
Score = 82.4 bits (90), Expect = 5e-11
Identities = 161/235 (69%), Gaps = 11/235 (5%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAA-TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
||| || || || |||| ||| | || || ||| |||||| || ||||| || || |
Sbjct 4428099 GCCACCCCTCAGGCGCAGGACCCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 4428040
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| || |||| | ||||| || || || || ||||| || | | ||| ||||| || |
Sbjct 4428039 ACAGGGTTCTGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 4427980
Query 34598 GCACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCT 34652
| | ||||||||||| |||||| ||| || ||||| ||||| |
Sbjct 4427979 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATA-----GTGTCACTGGG 4427925
Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|||||| |||| ||| || || || || || | || |||||||| |||||||||
Sbjct 4427924 CTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4427870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314722289028098
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