Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq36 506 2e-138 seq208 141 8e-29 >seq36 Length=18184789 Score = 506 bits (560), Expect = 2e-138 Identities = 627/858 (73%), Gaps = 0/858 (0%) Strand=Plus/Plus Query 6401 GCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTCCTCGCTC 6460 |||| |||||| || | || | ||| || || |||| | || ||||||||| | Sbjct 7685786 GCCATCTCCATTTTAATAGCTGGGTGAGGGTTATAGTCTTCAATCAGGAAGTCCTCAGCC 7685845 Query 6461 CTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGGTCGGGGC 6520 | || ||||| || | |||| |||||| |||| |||||| ||||| |||| || Sbjct 7685846 TTGAAATCATCAATGGCTTTGACTTCTCGAAGAATTCTGAGCTTAGGGAAAGGTCTTGGT 7685905 Query 6521 TCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCC 6580 ||||| || ||||| || || || | || || |||| ||| ||||| ||||| ||| Sbjct 7685906 TCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATATATGAGCATCTCCC 7685965 Query 6581 AACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTACGTGAGC 6640 | || || || | || || || || || ||||||||| |||||||| || ||| Sbjct 7685966 AGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATCATGTAGGTTAGC 7686025 Query 6641 AGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAG 6700 || | |||||| |||||||||||||||||||| | ||||| ||||| ||||| || || Sbjct 7686026 AGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCAGATCGCTGGTAT 7686085 Query 6701 AGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGG 6760 ||||| || || ||||| |||||| || ||||| || ||||| | |||||| || || Sbjct 7686086 AGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCGTGGCATGGAGGT 7686145 Query 6761 AGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCA 6820 | ||||||||||| ||||| || || ||||| || ||||| | |||||||||||||| | Sbjct 7686146 AATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAATGATCCTTCTGTCATGA 7686205 Query 6821 GGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAG 6880 || || || | ||||| || || | || || || ||| |||| ||||| ||||| Sbjct 7686206 GGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTCCTTGTCCAGAATAA 7686265 Query 6881 TCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGG 6940 || | | || | || || |||||||| |||||||||||||| || || || || Sbjct 7686266 TCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGT 7686325 Query 6941 CCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCG 7000 ||||| || || ||||| | | | ||||||| ||||||||| |||||||||||| || Sbjct 7686326 CCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGATCCA 7686385 Query 7001 TGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTC 7060 | ||||||||||| || || || || ||||||||||| | || |||| ||| | Sbjct 7686386 TTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACCCTTA 7686445 Query 7061 ACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGC 7120 | ||||||||||||||||| | ||| ||||||||| ||||||| || || ||||||| Sbjct 7686446 ATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACGCTTGGTTGTCAGCAAA 7686505 Query 7121 GGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTC 7180 ||||| || | || |||||||| ||||| || ||| ||||| || | ||| || || Sbjct 7686506 GGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAACACAGACACGGTGCCGGTG 7686565 Query 7181 CCGGTCCGGTCCCCCTTCCGGTAGCCCTCCCTGAGGATCCGCGCCACCTGATACAGATAC 7240 || || |||||| ||||| | |||| | | ||||| || | | ||| | ||||||| Sbjct 7686566 CCCGTGCGGTCCTCCTTCTTGCAGCCATGCTGCAGGATGTGCTCGATCTGCTCCAGATAC 7686625 Query 7241 TGCCACTCCCCATGCGGT 7258 ||| |||||||||| || Sbjct 7686626 TGCTTCTCCCCATGCAGT 7686643 Score = 506 bits (560), Expect = 2e-138 Identities = 627/858 (73%), Gaps = 0/858 (0%) Strand=Plus/Minus Query 34087 ACCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCG 34146 || |||||||||| |||||||||| | ||| | | || ||||| | | |||| | Sbjct 7686643 ACTGCATGGGGAGAAGCAGTATCTGGAGCAGATCGAGCACATCCTGCAGCATGGCTGCAA 7686584 Query 34147 GAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAA 34206 ||||| |||||| || || || || ||| | || ||||| ||| || ||||| ||||| Sbjct 7686583 GAAGGAGGACCGCACGGGCACCGGCACCGTGTCTGTGTTTGGCTTGCAAGCCCGCTACAA 7686524 Query 34207 CCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGA 34266 ||| || | || ||||| ||||||| || || ||||||| ||||||||| ||| | || Sbjct 7686523 CCTCCGAGATGAGTTTCCTTTGCTGACAACCAAGCGTGTGTTCTGGAAGGGTGTGCTGGA 7686464 Query 34267 GGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGT 34326 ||||||||||||||| | | ||| |||| || | ||||||||||| || || || Sbjct 7686463 GGAGCTGCTGTGGTTTATTAAGGGTTCCACAAATGCTAAGGAGCTCTCTGCCAAAGGAGT 7686404 Query 34327 GAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCG 34386 || ||||||||||| | || |||||||||||| ||||||||| ||||||| | | | Sbjct 7686403 AAAAATCTGGGACGCCAATGGATCTCGAGACTTTTTGGACAAGCAGGGGTTCACTACCAG 7686344 Query 34387 GGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 ||||| || || ||||| || || || || |||||||||||||| |||||||| || || Sbjct 7686343 AGAGGAAGGAGATTTGGGACCAGTGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATA 7686284 Query 34447 TCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGA 34506 | || | | || ||||| ||||| |||| ||| || || || | || || || Sbjct 7686283 CAAAGAGATGAATACAGATTATTCTGGACAAGGAGTGGATCAACTACAAAAAGTCATTGA 7686224 Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566 ||| | || || ||| |||||||||||||| | ||||| || ||||| || || || Sbjct 7686223 CACAATCAAAACCAATCCTCATGACAGAAGGATCATTATGTGTGCTTGGAATCCTAAAGA 7686164 Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626 ||| ||||||||||| | || || |||||| | ||||| || ||||| || |||||| Sbjct 7686163 TCTTCCTCTGATGGCATTACCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAATGG 7686104 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 ||||| || || ||||| || || ||||| ||||| ||||| | |||||||||||||| Sbjct 7686103 TGAGCTTTCTTGTCAGCTATACCAGCGATCTGGAGATATGGGCCTTGGGGTGCCGTTCAA 7686044 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746 |||||| |||||| | ||||| || |||||||| ||||||||| || || || || Sbjct 7686043 CATTGCCAGTTACTCCCTGCTAACCTACATGATTGCTCATGTCACAGGCCTGAAGCCAGG 7685984 Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCG 34806 || | || || || |||| ||||| ||||| ||| |||| || || | || || Sbjct 7685983 TGATTTTGTACACACTCTGGGAGATGCTCATATATACTTGAATCATATTGGGCCACTGAA 7685924 Query 34807 GATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCAC 34866 || ||||| || ||||| || |||| ||||| |||||| |||| |||||| |||| Sbjct 7685923 AATTCAGCTTCAGCGAGAACCAAGACCTTTCCCTAAGCTCAGAATTCTTCGAGAAGTCAA 7685864 Query 34867 CTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGC 34926 | || ||||| || | | ||||||||| || | |||| || || ||| | || Sbjct 7685863 AGCCATTGATGATTTCAAGGCTGAGGACTTCCTGATTGAAGACTATAACCCTCACCCAGC 7685804 Query 34927 CCTGAAGATGGAGTTGGC 34944 | || |||||| |||| Sbjct 7685803 TATTAAAATGGAGATGGC 7685786 >seq208 Length=5466430 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || || |||||| | ||||| || ||||| || |||| Sbjct 1463442 GATCTTCCTCTGATGGCACTGCCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAAT 1463501 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||| || || ||||| || || ||||| ||||| ||||| | || ||||||||| Sbjct 1463502 GGTGAGCTTTCTTGTCAGCTATACCAGCGATCTGGAGATATGGGCCTCGGAGTGCCGTTC 1463561 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || |||||| | ||||| || |||||||| ||||| Sbjct 1463562 AACATCGCCAGTTACTCCCTGCTAACCTACATGATTGCTCA 1463602 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 ||||| |||||||| || ||||| | |||||| || |||||||||||||| || | ||| Sbjct 1463602 TGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGCACTCCGAGGCCC 1463543 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| ||||| || || ||||| || || ||||| |||||| || ||||| || Sbjct 1463542 ATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGA 1463483 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| | |||||| || || || ||||||||||| ||||| Sbjct 1463482 CAGAGAGCGTGGCATGGAGGCAGTGCCATCAGAGGAAGATC 1463442 Score = 120 bits (132), Expect = 3e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | ||||||||||| || || || || ||||||||||| | || |||| Sbjct 1460097 CCACAAATGCTAAGGAGCTCTCTGCCAAAGGAGTAAAAATCTGGGACGCCAATGGATCTC 1460156 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| ||||||||| ||||||| | | | ||||| || || ||||| || || | Sbjct 1460157 GAGACTTTTTGGACAAGCAGGGGTTCACTACCAGAGAGGAAGGAGATTTGGGACCTGTAT 1460216 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| |||||||| || || Sbjct 1460217 ATGGCTTCCAGTGGAGACATTTTGGGGCAGAATA 1460250 Score = 120 bits (132), Expect = 3e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| |||||||||||||| || || || || ||||| || || ||||| Sbjct 1460250 TATTCTGCCCCAAAATGTCTCCACTGGAAGCCATATACAGGTCCCAAATCTCCTTCCTCT 1460191 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||||||| ||||||||| |||||||||||| || | ||||||||||| || Sbjct 1460190 CTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTT 1460131 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || || || ||||||||||| | || |||| Sbjct 1460130 ACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGG 1460097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251720148320