Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq36 167 2e-36 seq61 122 7e-23 seq211 96.9 3e-15 seq208 87.8 1e-12 >seq36 Length=18184789 Score = 167 bits (184), Expect = 2e-36 Identities = 406/607 (67%), Gaps = 6/607 (1%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||||||| |||| ||||||| || | ||||||||| || | || ||| Sbjct 7685915 AGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATATATGAGCATCTCCCAGAGTGTGT 7685974 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | || ||||| || | || ||||| | |||||||||||||| || | || ||| Sbjct 7685975 ACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATCATGTAGGTTAGCAGGGAGTAA 7686034 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | || || || || || || ||||| ||| | |||| |||||| | || ||| Sbjct 7686035 CTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAA 7686094 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || ||||| || || ||||| ||||||| | ||| |||||||| | |||| Sbjct 7686095 GAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCGTGGCATGGAGGTAATGCCATC 7686154 Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATGCCTTCTGCTATATGGTTCTACC 118755 | || | ||||||||| || | || ||||||| || || | Sbjct 7686155 AGAGGAAGATCTTTAGGATTCCAAGCACACATAATGATCCTTCTGTCATGAGGATTGGTT 7686214 Query 118756 TGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCG 118815 | || ||||| | || || | |||||||| || | ||||| ||| | | | Sbjct 7686215 TTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTCCTTGTCCAGAATAATCTGTAT-T 7686273 Query 118816 CATC-CTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATC 118874 |||| |||| ||||||||||||||| |||||| || || ||||| || || |||| ||| Sbjct 7686274 CATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAATC 7686333 Query 118875 TCCCTGGGACCT-AAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGCAT 118933 ||| | || | | | ||| ||| || | ||| ||| || ||||| || | Sbjct 7686334 TCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTC-CAAAAAGTCTCGAGATCCATTGGCGT 7686392 Query 118934 TCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAA-AAAC 118992 ||| || |||||||| | || || |||| ||||| ||||| ||||| |||| Sbjct 7686393 CCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACC-CTTAATAAAC 7686451 Query 118993 CAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAAC 119052 || || |||||||| | || || |||| || || || ||||| | || |||||| Sbjct 7686452 CACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACGCTTGGTTGTCAGCAAAGGAAAC 7686511 Query 119053 TGACCTC 119059 | | ||| Sbjct 7686512 TCATCTC 7686518 >seq61 Length=14200703 Score = 122 bits (134), Expect = 7e-23 Identities = 113/142 (80%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 3244 AGTTGTTGATGAGCTCTTCCGAGATGGGG-TAAACTGGGGGCGCATTGTTGCTTTCTTTG 3302 ||| || || ||||| ||| | ||||||| | ||||||||||| || || || ||||||| Sbjct 7374267 AGTAGTGGAGGAGCTGTTCAGGGATGGGGGTGAACTGGGGGCGGATCGTGGCCTTCTTTG 7374208 Query 3303 AGTTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACA 3362 | ||||||||||||||||||||||| |||||||| | | || | |||| || |||| Sbjct 7374207 AATTTGGTGGTGTTATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACA 7374148 Query 3363 ACATTGCCGCGTGGATGACAGA 3384 ||||||| ||||||||| || Sbjct 7374147 GCATTGCCCTGTGGATGACTGA 7374126 >seq211 Length=5372090 Score = 96.9 bits (106), Expect = 3e-15 Identities = 274/417 (66%), Gaps = 18/417 (4%) Strand=Plus/Plus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG 2322 ||||||||| | | || || || || ||||| ||||| || |||| | | ||| | Sbjct 3607864 AAACAGAATCTGTTGATAATAGGGAGGAAGACCTGGTTCTCCATTCC--TGAGAAGAA-- 3607919 Query 2323 CCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGG 2382 |||| ||| || ||| | ||||||| ||| | || || || || || | || Sbjct 3607920 ---TTGA----CAGGATTAATTTAGTTCTCAACAGAGAACTGAAGGAACCTCCTCCAGGA 3607972 Query 2383 GCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTA 2442 ||||| | |||| |||||| | ||| | | | || || | | | |||||| || Sbjct 3607973 GCTCATTACCTTGCCAAAAGTCTGGATGATACATTAGACCTTCTCAAACCTCCAGAACTA 3608032 Query 2443 AAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT 2502 | | | |||||| ||| ||| || |||| || || ||||| | | |||| || Sbjct 3608033 GCAAATAAGGTGGACT-GATCTGGGTAGTTGGAGGCAGCTCTGTTTTTAAGGAAGTTATG 3608091 Query 2503 ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGAT 2562 | | | || | | ||| |||| ||||| ||| ||||| ||||| | |||| Sbjct 3608092 AAGAAAACTAGTCATCAGTGACTGTG----ACAAGAATTTTGCAAGAATTTAA--GTGAA 3608145 Query 2563 ACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTT 2622 | | || |||||||| |||| | ||||| |||| ||| | |||| |||||||||| Sbjct 3608146 ATGTTTTTTTCAGAAATTGATCTAAAGAAATATAAACTTCTTCCAGAATATCCAGGTGTT 3608205 Query 2623 CCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGAAAAA 2679 | | | || || |||||||| | ||| | |||||||| ||||||||||| Sbjct 3608206 CTTACCGATGTCCAGGAAGAAAAAGACATTCAGCATAAATTTGAAGTATATGAAAAA 3608262 >seq208 Length=5466430 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||||||||||||||| || | || ||| ||||| | || || || Sbjct 1463614 AGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGC 1463555 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | |||| |||||| | || ||||| ||||| || || Sbjct 1463554 ACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAAT 1463495 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||||| | ||| ||||||||||| |||| Sbjct 1463494 ACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCAT 1463454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414467171962984