Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq36 167 2e-36
seq61 122 7e-23
seq211 96.9 3e-15
seq208 87.8 1e-12
>seq36
Length=18184789
Score = 167 bits (184), Expect = 2e-36
Identities = 406/607 (67%), Gaps = 6/607 (1%)
Strand=Plus/Plus
Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515
|| || | |||||||||| |||| ||||||| || | ||||||||| || | || |||
Sbjct 7685915 AGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATATATGAGCATCTCCCAGAGTGTGT 7685974
Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575
| || ||||| || | || ||||| | |||||||||||||| || | || |||
Sbjct 7685975 ACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATCATGTAGGTTAGCAGGGAGTAA 7686034
Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635
||||| | || || || || || || ||||| ||| | |||| |||||| | || |||
Sbjct 7686035 CTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAA 7686094
Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695
|| ||||| || || ||||| ||||||| | ||| |||||||| | ||||
Sbjct 7686095 GAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCGTGGCATGGAGGTAATGCCATC 7686154
Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATGCCTTCTGCTATATGGTTCTACC 118755
| || | ||||||||| || | || ||||||| || || |
Sbjct 7686155 AGAGGAAGATCTTTAGGATTCCAAGCACACATAATGATCCTTCTGTCATGAGGATTGGTT 7686214
Query 118756 TGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCG 118815
| || ||||| | || || | |||||||| || | ||||| ||| | | |
Sbjct 7686215 TTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTCCTTGTCCAGAATAATCTGTAT-T 7686273
Query 118816 CATC-CTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATC 118874
|||| |||| ||||||||||||||| |||||| || || ||||| || || |||| |||
Sbjct 7686274 CATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAATC 7686333
Query 118875 TCCCTGGGACCT-AAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGCAT 118933
||| | || | | | ||| ||| || | ||| ||| || ||||| || |
Sbjct 7686334 TCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTC-CAAAAAGTCTCGAGATCCATTGGCGT 7686392
Query 118934 TCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAA-AAAC 118992
||| || |||||||| | || || |||| ||||| ||||| ||||| ||||
Sbjct 7686393 CCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACC-CTTAATAAAC 7686451
Query 118993 CAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAAC 119052
|| || |||||||| | || || |||| || || || ||||| | || ||||||
Sbjct 7686452 CACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACGCTTGGTTGTCAGCAAAGGAAAC 7686511
Query 119053 TGACCTC 119059
| | |||
Sbjct 7686512 TCATCTC 7686518
>seq61
Length=14200703
Score = 122 bits (134), Expect = 7e-23
Identities = 113/142 (80%), Gaps = 1/142 (1%)
Strand=Plus/Minus
Query 3244 AGTTGTTGATGAGCTCTTCCGAGATGGGG-TAAACTGGGGGCGCATTGTTGCTTTCTTTG 3302
||| || || ||||| ||| | ||||||| | ||||||||||| || || || |||||||
Sbjct 7374267 AGTAGTGGAGGAGCTGTTCAGGGATGGGGGTGAACTGGGGGCGGATCGTGGCCTTCTTTG 7374208
Query 3303 AGTTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACA 3362
| ||||||||||||||||||||||| |||||||| | | || | |||| || ||||
Sbjct 7374207 AATTTGGTGGTGTTATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACA 7374148
Query 3363 ACATTGCCGCGTGGATGACAGA 3384
||||||| ||||||||| ||
Sbjct 7374147 GCATTGCCCTGTGGATGACTGA 7374126
>seq211
Length=5372090
Score = 96.9 bits (106), Expect = 3e-15
Identities = 274/417 (66%), Gaps = 18/417 (4%)
Strand=Plus/Plus
Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG 2322
||||||||| | | || || || || ||||| ||||| || |||| | | ||| |
Sbjct 3607864 AAACAGAATCTGTTGATAATAGGGAGGAAGACCTGGTTCTCCATTCC--TGAGAAGAA-- 3607919
Query 2323 CCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGG 2382
|||| ||| || ||| | ||||||| ||| | || || || || || | ||
Sbjct 3607920 ---TTGA----CAGGATTAATTTAGTTCTCAACAGAGAACTGAAGGAACCTCCTCCAGGA 3607972
Query 2383 GCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTA 2442
||||| | |||| |||||| | ||| | | | || || | | | |||||| ||
Sbjct 3607973 GCTCATTACCTTGCCAAAAGTCTGGATGATACATTAGACCTTCTCAAACCTCCAGAACTA 3608032
Query 2443 AAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT 2502
| | | |||||| ||| ||| || |||| || || ||||| | | |||| ||
Sbjct 3608033 GCAAATAAGGTGGACT-GATCTGGGTAGTTGGAGGCAGCTCTGTTTTTAAGGAAGTTATG 3608091
Query 2503 ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGAT 2562
| | | || | | ||| |||| ||||| ||| ||||| ||||| | ||||
Sbjct 3608092 AAGAAAACTAGTCATCAGTGACTGTG----ACAAGAATTTTGCAAGAATTTAA--GTGAA 3608145
Query 2563 ACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTT 2622
| | || |||||||| |||| | ||||| |||| ||| | |||| ||||||||||
Sbjct 3608146 ATGTTTTTTTCAGAAATTGATCTAAAGAAATATAAACTTCTTCCAGAATATCCAGGTGTT 3608205
Query 2623 CCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGAAAAA 2679
| | | || || |||||||| | ||| | |||||||| |||||||||||
Sbjct 3608206 CTTACCGATGTCCAGGAAGAAAAAGACATTCAGCATAAATTTGAAGTATATGAAAAA 3608262
>seq208
Length=5466430
Score = 87.8 bits (96), Expect = 1e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| ||||| | ||||||||||||||| || | || ||| ||||| | || || ||
Sbjct 1463614 AGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGC 1463555
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| || || ||||| ||| | |||| |||||| | || ||||| ||||| || ||
Sbjct 1463554 ACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAAT 1463495
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
||||| ||||||| | ||| ||||||||||| ||||
Sbjct 1463494 ACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCAT 1463454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414467171962984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |