Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq103 87.8 2e-12
>seq103
Length=10584223
Score = 87.8 bits (96), Expect = 2e-12
Identities = 164/240 (68%), Gaps = 6/240 (3%)
Strand=Plus/Minus
Query 39046 AATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATA 39105
|||||| || ||||| || ||||| | ||||| || || ||| ||||| || ||
Sbjct 9901511 AATTTAGACA--CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATG 9901454
Query 39106 TTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC 39165
|| || || | || || || | || || ||||| || || ||||| || | | ||||
Sbjct 9901453 TTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGC 9901394
Query 39166 TGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCG 39225
||||||| ||| | || |||||||| ||| | ||||| || | | || ||
Sbjct 9901393 TGGTCGGGGGGGATGCCTTCTTTGTCTTGGATCT----TTTGACATTCTCAATGGTGTCA 9901338
Query 39226 CTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
|| | |||||| |||| ||||| | || || |||| || || || ||||| ||||||
Sbjct 9901337 CTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATC 9901278
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/228 (68%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| ||||| | || | ||||| || || ||| |||||| || || || || || |
Sbjct 9901049 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900990
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || || | || || ||||| || || ||||| || | | ||||||||||| |||
Sbjct 9900989 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9900930
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| || |||||||| ||| || |||| || | | || || || | ||||||
Sbjct 9900929 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9900870
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
|||| ||||| | || || |||| || || |||||||| ||||||
Sbjct 9900869 TCCA-GGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATC 9900823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429535621924178
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |