Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq103 87.8 2e-12 >seq103 Length=10584223 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/240 (68%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 39046 AATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATA 39105 |||||| || ||||| || ||||| | ||||| || || ||| ||||| || || Sbjct 9901511 AATTTAGACA--CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATG 9901454 Query 39106 TTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC 39165 || || || | || || || | || || ||||| || || ||||| || | | |||| Sbjct 9901453 TTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGC 9901394 Query 39166 TGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCG 39225 ||||||| ||| | || |||||||| ||| | ||||| || | | || || Sbjct 9901393 TGGTCGGGGGGGATGCCTTCTTTGTCTTGGATCT----TTTGACATTCTCAATGGTGTCA 9901338 Query 39226 CTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || | |||||| |||| ||||| | || || |||| || || || ||||| |||||| Sbjct 9901337 CTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATC 9901278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||| || || ||| |||||| || || || || || | Sbjct 9901049 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900990 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || ||||| || | | ||||||||||| ||| Sbjct 9900989 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9900930 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||||||| ||| || |||| || | | || || || | |||||| Sbjct 9900929 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9900870 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || |||| || || |||||||| |||||| Sbjct 9900869 TCCA-GGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATC 9900823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429535621924178