Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq65 111 1e-19 seq103 107 1e-18 seq85 102 6e-17 seq365 98.7 7e-16 seq46 89.7 3e-13 seq37 84.2 1e-11 seq73 82.4 5e-11 seq43 82.4 5e-11 >seq65 Length=13810318 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||| ||| || || || ||||| ||| | || || |||||||| || ||||| ||| Sbjct 5575442 ATGCGGATCTTTGTGAAGACCCTGACGAGCAAGACCATCACTCTTGAGGTTGAACCCAGT 5575383 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | ||| | |||| | ||||| |||||| | || |||||||| Sbjct 5575382 GATACTATCGAGAATGTCAAAGCCAAAA-TCCAGGACAAGGAAGGTATCCCACCAGATCA 5575324 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| || ||||| || ||||| || ||||| | || |||| ||| ||||| Sbjct 5575323 ACAACGTCCGATTTTTGCTGGAAAACAGCTAGAAGATGGCCGAACTTCCTCCGACTACAA 5575264 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 5575263 CATCCAGAAAGAGTCCAC 5575246 >seq103 Length=10584223 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || ||||| || ||| Sbjct 9901051 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901110 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||||||||| | || ||||| || Sbjct 9901111 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCTCCAGACCA 9901169 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || |||||||| | ||||| | || ||||| Sbjct 9901170 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9901229 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 9901230 CATCCAGAAAGAGTCCAC 9901247 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || ||||| || ||| Sbjct 9900596 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAGT 9900655 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||||||||| | || ||||| || Sbjct 9900656 GACACCATTGAGAATGTCAAGGCGAAGA-TCCAAGACAAAGAAGGCATTCCTCCAGACCA 9900714 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || |||||||| | ||||| | || ||||| Sbjct 9900715 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9900774 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||||||||| | ||||| || Sbjct 9900775 CATCCAGAAAGAGTCCACCCTGCATTTGGT 9900804 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||| | || || || || ||||| || ||||| || ||| Sbjct 9900140 AATGCAGATCTTTGTGAAGACCTTAACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAG 9900199 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || |||| | | ||||||||||| | || ||||| | Sbjct 9900200 TGACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCTCCAGACC 9900258 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || |||||||| || || |||||||| | ||||| | || |||| Sbjct 9900259 AGCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACA 9900318 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 9900319 ACATCCAGAAAGAGTCCAC 9900337 Score = 98.7 bits (108), Expect = 7e-16 Identities = 143/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || ||||| || ||| Sbjct 9900369 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9900428 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||||||||| | || ||||| || Sbjct 9900429 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCTCCAGACCA 9900487 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || |||||||| | ||||| | || ||||| Sbjct 9900488 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9900547 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 9900548 CATCCAGAAAGA-TCCAC 9900564 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || ||||| || ||| Sbjct 9901279 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901338 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | |||| | || ||||||||||| | || || || || Sbjct 9901339 GACACCATTGAGAATGTCAAAAGATCCAA-----GACAAAGAAGGCATCCCCCCCGACCA 9901393 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || |||||||| | ||||| | || ||||| Sbjct 9901394 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9901453 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 9901454 CATCCAGAAAGAATCCAC 9901471 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || ||||| || ||||| || ||| Sbjct 9900824 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCAC-CTGGAAGTGGAGCCCAGT 9900882 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||||||||| | || || || || Sbjct 9900883 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCCCCCGACCA 9900941 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || |||||||| | ||||| | || ||||| Sbjct 9900942 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9901001 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 9901002 CATCCAGAAAGAGTCCAC 9901019 >seq85 Length=11587828 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || |||||||| || ||||| ||| Sbjct 256373 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACTCTTGAGGTTGAACCCAGT 256432 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | ||| | |||| | || || |||||| | || |||||||| Sbjct 256433 GATACTATCGAGAATGTCAAAGCCAAAA-TCCAGGAAAAGGAAGGTATCCCACCAGATCA 256491 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | ||| | || ||||| || ||||| || ||||| | || ||| | ||| |||| Sbjct 256492 GTAACGTCTGATTTTTGCTGGAAAACAGCTAGAAGATGGCCGAACTCTCTCCGACTACAT 256551 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||||||||| |||| || || Sbjct 256552 TATCCAGAAAGAGTCCACTCTACACTTGGT 256581 >seq365 Length=1348131 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 || ||||| || || || ||||| | ||| || || |||||||| || ||||| ||| Sbjct 790250 ATACAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTTGAACCCAGT 790309 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | | | || ||| | ||| | |||| | ||||| |||||| | || |||||| | Sbjct 790310 GATATTATCGAGAATGTCAAAGCCAAAA-TCCAGGACAAGGAAGGTATCCCACCAGATGA 790368 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||| || ||||| | |||||||| ||||| | | ||| | || ||||| Sbjct 790369 ACAATGTTTGATTTTTGCTAGAAAACAACTAGAAGATGGCCAAACTCTCTCTGACTACAA 790428 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 790429 CATCCAGAAAGAGTCCAC 790446 >seq46 Length=16939101 Score = 89.7 bits (98), Expect = 3e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || || || |||||||| || || || | | Sbjct 5708280 ATGCAGATTTTCGTGAAGACTTTGACCGGGAAGACCATCACTCTTGAGGTCGAACCATCT 5708339 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| ||||| | || || | || || || ||| || || |||||| Sbjct 5708340 GACACTACTGAAAATGTCAAGGCCAAGGTACAAGATAAGGATGGTACTCCCCCTGATCAA 5708399 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| ||||| ||||||||||| | || ||||| || |||||| Sbjct 5708400 CAAAGATTGATTTTTGCAGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5708459 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834 || || || ||||| ||| | ||| | ||| | ||| | || || Sbjct 5708460 ATTCAGAAGGAGTCTACACTTCATCTTGTTCTGAGGCTTCGTGG 5708503 >seq37 Length=18181243 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||| | || || | || || || || || || || || || || | Sbjct 5582606 ATGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTGTCT 5582665 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || || || || || |||||| | || || |||||| Sbjct 5582666 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 5582725 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| ||||| ||||||||||| | || ||||| || |||||| Sbjct 5582726 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5582785 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGG 23826 || || || ||||| || | ||| | ||| ||||| Sbjct 5582786 ATTCAGAAGGAGTCTACCCTTCATCTTGTTCTAAGG 5582821 >seq73 Length=13007589 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT----- 23665 |||||||||||||| || || | | ||| || || ||||| || || |||| Sbjct 8615758 ATGCAGATTTTCGTGAAGACTTTGATGGGGAAGACCATCACGCTTGAGCTTGAGGTCGAA 8615699 Query 23666 CCA-CGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 ||| | || ||| ||| |||| | || | || | | || ||||||||| | || || Sbjct 8615698 CCATCTGATACTATTGCAAATGTCAAGGCCAAGA-TACAAGATAAAGAAGGTATTCCCCC 8615640 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 |||||||| | || || ||||| ||||| ||||||||||| | || ||||| || Sbjct 8615639 TGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGA 8615580 Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||| || || || || || | ||| | ||| | ||| | || || || Sbjct 8615579 CTACAACATTCAGAAGGAATCTACCCTTCATCTTGTTCTGAGGCTTCGTGGTGG 8615526 >seq43 Length=17472961 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCAC-GGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||||| || | ||| || || ||||| || || || || | | Sbjct 5107206 ATGCAGATTTTCGTTAAGACTTTGGGAGGGGAAGACCATCACCCTTGAGGTCGAACCATC 5107147 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 | ||| |||||| | || || || || || |||||| | || | ||||| Sbjct 5107146 CAATACTATTGAAAATGTCAAGGCCAAGATACAAGAGAAGGAAGGTATTCCCCTTGATCA 5107087 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| ||||| ||||||||||| | || |||||| || ||||| Sbjct 5107086 ACAGAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGACAAACTTTATCTGACTACAA 5107027 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGG 23826 ||| || || |||| || | ||| | ||| | ||| Sbjct 5107026 CATTCAGAAGAAGTCTACCCTTCATCTTGTTCTGAGG 5106990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001748248248