Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq65 111 1e-19
seq103 107 1e-18
seq85 102 6e-17
seq365 98.7 7e-16
seq46 89.7 3e-13
seq37 84.2 1e-11
seq73 82.4 5e-11
seq43 82.4 5e-11
>seq65
Length=13810318
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||| ||| || || || ||||| ||| | || || |||||||| || ||||| |||
Sbjct 5575442 ATGCGGATCTTTGTGAAGACCCTGACGAGCAAGACCATCACTCTTGAGGTTGAACCCAGT 5575383
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| ||| | || ||| | ||| | |||| | ||||| |||||| | || ||||||||
Sbjct 5575382 GATACTATCGAGAATGTCAAAGCCAAAA-TCCAGGACAAGGAAGGTATCCCACCAGATCA 5575324
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| || ||||| || ||||| || ||||| | || |||| ||| |||||
Sbjct 5575323 ACAACGTCCGATTTTTGCTGGAAAACAGCTAGAAGATGGCCGAACTTCCTCCGACTACAA 5575264
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 5575263 CATCCAGAAAGAGTCCAC 5575246
>seq103
Length=10584223
Score = 107 bits (118), Expect = 1e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || || || ||||| || ||||| || |||
Sbjct 9901051 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901110
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || |||| | | ||||||||||| | || ||||| ||
Sbjct 9901111 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCTCCAGACCA 9901169
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || |||||||| || || |||||||| | ||||| | || |||||
Sbjct 9901170 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9901229
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 9901230 CATCCAGAAAGAGTCCAC 9901247
Score = 105 bits (116), Expect = 5e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || || || ||||| || ||||| || |||
Sbjct 9900596 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAGT 9900655
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || | | ||||||||||| | || ||||| ||
Sbjct 9900656 GACACCATTGAGAATGTCAAGGCGAAGA-TCCAAGACAAAGAAGGCATTCCTCCAGACCA 9900714
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || |||||||| || || |||||||| | ||||| | || |||||
Sbjct 9900715 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9900774
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| || ||||||||||| | ||||| ||
Sbjct 9900775 CATCCAGAAAGAGTCCACCCTGCATTTGGT 9900804
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || || ||| | || || || || ||||| || ||||| || |||
Sbjct 9900140 AATGCAGATCTTTGTGAAGACCTTAACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAG 9900199
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| |||| ||| | || |||| | | ||||||||||| | || ||||| |
Sbjct 9900200 TGACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCTCCAGACC 9900258
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||| | || || |||||||| || || |||||||| | ||||| | || ||||
Sbjct 9900259 AGCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACA 9900318
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || |||||||||||
Sbjct 9900319 ACATCCAGAAAGAGTCCAC 9900337
Score = 98.7 bits (108), Expect = 7e-16
Identities = 143/198 (72%), Gaps = 3/198 (2%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || || || ||||| || ||||| || |||
Sbjct 9900369 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9900428
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || |||| | | ||||||||||| | || ||||| ||
Sbjct 9900429 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCTCCAGACCA 9900487
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || |||||||| || || |||||||| | ||||| | || |||||
Sbjct 9900488 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9900547
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || ||||| |||||
Sbjct 9900548 CATCCAGAAAGA-TCCAC 9900564
Score = 96.9 bits (106), Expect = 2e-15
Identities = 141/198 (71%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || || || ||||| || ||||| || |||
Sbjct 9901279 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901338
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | |||| | || ||||||||||| | || || || ||
Sbjct 9901339 GACACCATTGAGAATGTCAAAAGATCCAA-----GACAAAGAAGGCATCCCCCCCGACCA 9901393
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || |||||||| || || |||||||| | ||||| | || |||||
Sbjct 9901394 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9901453
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || ||||| |||||
Sbjct 9901454 CATCCAGAAAGAATCCAC 9901471
Score = 95.1 bits (104), Expect = 8e-15
Identities = 142/198 (72%), Gaps = 3/198 (2%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||| | || || || || ||||| || ||||| || |||
Sbjct 9900824 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCAC-CTGGAAGTGGAGCCCAGT 9900882
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || |||| | | ||||||||||| | || || || ||
Sbjct 9900883 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCCCCCGACCA 9900941
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || |||||||| || || |||||||| | ||||| | || |||||
Sbjct 9900942 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9901001
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 9901002 CATCCAGAAAGAGTCCAC 9901019
>seq85
Length=11587828
Score = 102 bits (112), Expect = 6e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| || || || || |||||||| || ||||| |||
Sbjct 256373 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACTCTTGAGGTTGAACCCAGT 256432
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| ||| | || ||| | ||| | |||| | || || |||||| | || ||||||||
Sbjct 256433 GATACTATCGAGAATGTCAAAGCCAAAA-TCCAGGAAAAGGAAGGTATCCCACCAGATCA 256491
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
| ||| | || ||||| || ||||| || ||||| | || ||| | ||| ||||
Sbjct 256492 GTAACGTCTGATTTTTGCTGGAAAACAGCTAGAAGATGGCCGAACTCTCTCCGACTACAT 256551
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || ||||||||||| |||| || ||
Sbjct 256552 TATCCAGAAAGAGTCCACTCTACACTTGGT 256581
>seq365
Length=1348131
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|| ||||| || || || ||||| | ||| || || |||||||| || ||||| |||
Sbjct 790250 ATACAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTTGAACCCAGT 790309
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| | | | || ||| | ||| | |||| | ||||| |||||| | || |||||| |
Sbjct 790310 GATATTATCGAGAATGTCAAAGCCAAAA-TCCAGGACAAGGAAGGTATCCCACCAGATGA 790368
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| |||| || ||||| | |||||||| ||||| | | ||| | || |||||
Sbjct 790369 ACAATGTTTGATTTTTGCTAGAAAACAACTAGAAGATGGCCAAACTCTCTCTGACTACAA 790428
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 790429 CATCCAGAAAGAGTCCAC 790446
>seq46
Length=16939101
Score = 89.7 bits (98), Expect = 3e-13
Identities = 154/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || | || || || || |||||||| || || || | |
Sbjct 5708280 ATGCAGATTTTCGTGAAGACTTTGACCGGGAAGACCATCACTCTTGAGGTCGAACCATCT 5708339
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| ||||| | || || | || || || ||| || || ||||||
Sbjct 5708340 GACACTACTGAAAATGTCAAGGCCAAGGTACAAGATAAGGATGGTACTCCCCCTGATCAA 5708399
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | || || ||||| ||||| ||||||||||| | || ||||| || ||||||
Sbjct 5708400 CAAAGATTGATTTTTGCAGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5708459
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834
|| || || ||||| ||| | ||| | ||| | ||| | || ||
Sbjct 5708460 ATTCAGAAGGAGTCTACACTTCATCTTGTTCTGAGGCTTCGTGG 5708503
>seq37
Length=18181243
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||| | || || | || || || || || || || || || || |
Sbjct 5582606 ATGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTGTCT 5582665
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| |||||| | || || || || || |||||| | || || ||||||
Sbjct 5582666 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 5582725
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | || || ||||| ||||| ||||||||||| | || ||||| || ||||||
Sbjct 5582726 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5582785
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGG 23826
|| || || ||||| || | ||| | ||| |||||
Sbjct 5582786 ATTCAGAAGGAGTCTACCCTTCATCTTGTTCTAAGG 5582821
>seq73
Length=13007589
Score = 82.4 bits (90), Expect = 5e-11
Identities = 161/234 (69%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT----- 23665
|||||||||||||| || || | | ||| || || ||||| || || ||||
Sbjct 8615758 ATGCAGATTTTCGTGAAGACTTTGATGGGGAAGACCATCACGCTTGAGCTTGAGGTCGAA 8615699
Query 23666 CCA-CGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723
||| | || ||| ||| |||| | || | || | | || ||||||||| | || ||
Sbjct 8615698 CCATCTGATACTATTGCAAATGTCAAGGCCAAGA-TACAAGATAAAGAAGGTATTCCCCC 8615640
Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783
|||||||| | || || ||||| ||||| ||||||||||| | || ||||| ||
Sbjct 8615639 TGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGA 8615580
Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|||||||| || || || || || | ||| | ||| | ||| | || || ||
Sbjct 8615579 CTACAACATTCAGAAGGAATCTACCCTTCATCTTGTTCTGAGGCTTCGTGGTGG 8615526
>seq43
Length=17472961
Score = 82.4 bits (90), Expect = 5e-11
Identities = 149/217 (69%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCAC-GGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||||| || | ||| || || ||||| || || || || | |
Sbjct 5107206 ATGCAGATTTTCGTTAAGACTTTGGGAGGGGAAGACCATCACCCTTGAGGTCGAACCATC 5107147
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
| ||| |||||| | || || || || || |||||| | || | |||||
Sbjct 5107146 CAATACTATTGAAAATGTCAAGGCCAAGATACAAGAGAAGGAAGGTATTCCCCTTGATCA 5107087
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | || || ||||| ||||| ||||||||||| | || |||||| || |||||
Sbjct 5107086 ACAGAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGACAAACTTTATCTGACTACAA 5107027
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGG 23826
||| || || |||| || | ||| | ||| | |||
Sbjct 5107026 CATTCAGAAGAAGTCTACCCTTCATCTTGTTCTGAGG 5106990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338001748248248
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