Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq36 320 1e-82 seq208 123 2e-23 >seq36 Length=18184789 Score = 320 bits (354), Expect = 1e-82 Identities = 479/687 (70%), Gaps = 1/687 (0%) Strand=Plus/Plus Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670 |||||||| ||| || || | || |||||||| |||| || | | || | | ||| Sbjct 7685891 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTA 7685949 Query 29671 GACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29730 | |||||||||||||| ||||| ||||| || || || | || || ||||| ||||| Sbjct 7685950 TATATGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGC 7686009 Query 29731 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC 29790 |||||||| || || || ||||| ||||| ||||| || |||||||| || ||||| || Sbjct 7686010 AATCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATC 7686069 Query 29791 CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 29850 || || | |||||| ||||| || || ||||| || | || || |||||||| | Sbjct 7686070 TCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAG 7686129 Query 29851 GGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGAT 29910 || ||||| ||||| | ||||| ||| | ||||| || ||||| ||||||| || Sbjct 7686130 AGCGTGGCATGGAGGTAATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAAT 7686189 Query 29911 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 29970 ||| | ||||| | || ||| | |||| ||| | | | ||||| || |||||||| Sbjct 7686190 GATCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCAC 7686249 Query 29971 CCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTG 30030 || || || || |||| | ||||| |||||||| Sbjct 7686250 TCCTTGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTG 7686309 Query 30031 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30090 ||| || ||||| ||||||| ||||| || || ||| ||| ||| ||||||||| Sbjct 7686310 GAAGCCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAA 7686369 Query 30091 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30150 |||||||| || || |||||||||||||| ||||| || || | |||||||| || | Sbjct 7686370 AAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGC 7686429 Query 30151 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30210 |||||||| || | | ||||||||||||||||||| || ||||||| || || | Sbjct 7686430 ATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACG 7686489 Query 30211 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACAT 30270 |||||| || || | ||||||| | |||| ||| | || || | ||||||| Sbjct 7686490 CTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAACAC 7686549 Query 30271 GGACAAGACTCCCGTGCCTGTCCTGTC 30297 |||| | || ||||| || | ||| Sbjct 7686550 AGACACGGTGCCGGTGCCCGTGCGGTC 7686576 >seq208 Length=5466430 Score = 123 bits (136), Expect = 2e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || |||| |||||| |||||||| || || || ||||| ||||||||||| || || Sbjct 1463615 TAGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGG 1463556 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| ||||| ||||| || || || | |||||| ||||| || || ||||| || | Sbjct 1463555 CACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAA 1463496 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || |||||||| | || ||||| ||||| || ||||| ||| Sbjct 1463495 TACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATCAGA 1463450 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| ||||||||||| || || || ||||||| ||||| || || ||| ||| Sbjct 1460238 AAATGTCTCCACTGGAAGCCATATACAGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAAC 1460179 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||||| || || |||||||||||||| ||||| || || | Sbjct 1460178 CCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCA 1460119 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 |||||||| || | |||||||| || Sbjct 1460118 GAGAGCTCCTTAGCATTTGTGGAACC 1460093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406153765082716