Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq36 320 1e-82
seq208 123 2e-23
>seq36
Length=18184789
Score = 320 bits (354), Expect = 1e-82
Identities = 479/687 (70%), Gaps = 1/687 (0%)
Strand=Plus/Plus
Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670
|||||||| ||| || || | || |||||||| |||| || | | || | | |||
Sbjct 7685891 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTA 7685949
Query 29671 GACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29730
| |||||||||||||| ||||| ||||| || || || | || || ||||| |||||
Sbjct 7685950 TATATGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGC 7686009
Query 29731 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC 29790
|||||||| || || || ||||| ||||| ||||| || |||||||| || ||||| ||
Sbjct 7686010 AATCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATC 7686069
Query 29791 CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 29850
|| || | |||||| ||||| || || ||||| || | || || |||||||| |
Sbjct 7686070 TCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAG 7686129
Query 29851 GGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGAT 29910
|| ||||| ||||| | ||||| ||| | ||||| || ||||| ||||||| ||
Sbjct 7686130 AGCGTGGCATGGAGGTAATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAAT 7686189
Query 29911 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 29970
||| | ||||| | || ||| | |||| ||| | | | ||||| || ||||||||
Sbjct 7686190 GATCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCAC 7686249
Query 29971 CCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTG 30030
|| || || || |||| | ||||| ||||||||
Sbjct 7686250 TCCTTGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTG 7686309
Query 30031 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30090
||| || ||||| ||||||| ||||| || || ||| ||| ||| |||||||||
Sbjct 7686310 GAAGCCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAA 7686369
Query 30091 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30150
|||||||| || || |||||||||||||| ||||| || || | |||||||| || |
Sbjct 7686370 AAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGC 7686429
Query 30151 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30210
|||||||| || | | ||||||||||||||||||| || ||||||| || || |
Sbjct 7686430 ATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACG 7686489
Query 30211 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACAT 30270
|||||| || || | ||||||| | |||| ||| | || || | |||||||
Sbjct 7686490 CTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAACAC 7686549
Query 30271 GGACAAGACTCCCGTGCCTGTCCTGTC 30297
|||| | || ||||| || | |||
Sbjct 7686550 AGACACGGTGCCGGTGCCCGTGCGGTC 7686576
>seq208
Length=5466430
Score = 123 bits (136), Expect = 2e-23
Identities = 127/166 (77%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772
||| || |||| |||||| |||||||| || || || ||||| ||||||||||| || ||
Sbjct 1463615 TAGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGG 1463556
Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832
||| ||||| ||||| || || || | |||||| ||||| || || ||||| || |
Sbjct 1463555 CACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAA 1463496
Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
|| || |||||||| | || ||||| ||||| || ||||| |||
Sbjct 1463495 TACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATCAGA 1463450
Score = 114 bits (126), Expect = 1e-20
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||| ||||||||||| || || || ||||||| ||||| || || ||| |||
Sbjct 1460238 AAATGTCTCCACTGGAAGCCATATACAGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAAC 1460179
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| ||||||||||||||||| || || |||||||||||||| ||||| || || |
Sbjct 1460178 CCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCA 1460119
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
|||||||| || | |||||||| ||
Sbjct 1460118 GAGAGCTCCTTAGCATTTGTGGAACC 1460093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406153765082716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |