Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq48 116 3e-21
seq8 89.7 4e-13
>seq48
Length=16487017
Score = 116 bits (128), Expect = 3e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||| ||||| ||||| || ||||| |||||||| ||||||||||||| || ||
Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| |||
Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 7775719
Query 4692 AC 4693
||
Sbjct 7775718 AC 7775717
Score = 107 bits (118), Expect = 2e-18
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868
||||| | |||||||||||| || || || |||||||||||||||||||| ||||| |||
Sbjct 7772395 GGGTCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATA 7772336
Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
||||| ||||| || || || || | |||||| |||| || |||||
Sbjct 7772335 GCAATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTC 7772289
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990
||| || ||||| |||||||| || ||||| |||||||| || ||||| |||||||||||
Sbjct 7771918 TACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAACACATGAGATAT 7771859
Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| | || |||||||| | | || |||||| | | ||| ||||
Sbjct 7771858 GAAGTATTTCTCCTCAGGCTTCATTGATTCCCAGTGCTGAATATCCTTAG 7771809
>seq8
Length=27308231
Score = 89.7 bits (98), Expect = 4e-13
Identities = 99/131 (76%), Gaps = 1/131 (1%)
Strand=Plus/Plus
Query 4921 AAAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979
|||||| ||| || || || || || ||||| || ||||||||||||||||| |||||
Sbjct 9734879 AAAATCAGTCTTACCAAATTCTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAG 9734938
Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039
| ||||| || || |||| || || | || ||||| |||||||| || | ||| ||
Sbjct 9734939 ATGTGAGAGATGAAATACTTCTCATCTGATTTCAGTTTGTTCCAGTGAGGAAGATCCTTT 9734998
Query 5040 GTTAAATCAAC 5050
| ||| |||||
Sbjct 9734999 GATAAGTCAAC 9735009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427039679904698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |