Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq48 116 3e-21 seq8 89.7 4e-13 >seq48 Length=16487017 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| ||||| ||||| || ||||| |||||||| ||||||||||||| || || Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 7775719 Query 4692 AC 4693 || Sbjct 7775718 AC 7775717 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 ||||| | |||||||||||| || || || |||||||||||||||||||| ||||| ||| Sbjct 7772395 GGGTCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATA 7772336 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| ||||| || || || || | |||||| |||| || ||||| Sbjct 7772335 GCAATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTC 7772289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| |||||||| || ||||| |||||||| || ||||| ||||||||||| Sbjct 7771918 TACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAACACATGAGATAT 7771859 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| | || |||||||| | | || |||||| | | ||| |||| Sbjct 7771858 GAAGTATTTCTCCTCAGGCTTCATTGATTCCCAGTGCTGAATATCCTTAG 7771809 >seq8 Length=27308231 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 4921 AAAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 |||||| ||| || || || || || ||||| || ||||||||||||||||| ||||| Sbjct 9734879 AAAATCAGTCTTACCAAATTCTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAG 9734938 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039 | ||||| || || |||| || || | || ||||| |||||||| || | ||| || Sbjct 9734939 ATGTGAGAGATGAAATACTTCTCATCTGATTTCAGTTTGTTCCAGTGAGGAAGATCCTTT 9734998 Query 5040 GTTAAATCAAC 5050 | ||| ||||| Sbjct 9734999 GATAAGTCAAC 9735009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039679904698