Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq36 385 4e-102 seq208 136 3e-27 >seq36 Length=18184789 Score = 385 bits (426), Expect = 4e-102 Identities = 502/690 (73%), Gaps = 7/690 (1%) Strand=Plus/Plus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 |||||||| ||| || || | || |||||| | ||||| || | | |||| || ||| Sbjct 7685891 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTA 7685949 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 | ||||| |||||||| ||||| ||||| || || || | || || ||||| ||||| Sbjct 7685950 TATATGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGC 7686009 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 |||||||| || || || ||||| ||||| ||||| || || ||||| || ||||| || Sbjct 7686010 AATCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATC 7686069 Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATAT 27344 || || | |||||| |||||||| || ||||| |||| ||| || |||||||| | Sbjct 7686070 TCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAG 7686129 Query 27345 GGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACAC 27401 |||||||| ||||| | ||||| |||| ||| ||||| || ||||| || |||| Sbjct 7686130 AGCGTGGCATGGAGGTAATGCCATCAGAGG---AAGATCTTTAGGATTCCAAGCACACAT 7686186 Query 27402 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 27461 ||||| | ||||| | || ||| | |||| ||| | | | ||||| || ||||| Sbjct 7686187 AATGATCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATC 7686246 Query 27462 CACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 27521 ||| || || || || ||| |||| || |||| ||||| || ||||| ||||| Sbjct 7686247 CACTCCTTGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCA 7686306 Query 27522 TTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 27581 ||||| || ||||| ||||||| ||||| || || ||| ||| ||| |||||| Sbjct 7686307 CTGGAAGCCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTC 7686366 Query 27582 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 27641 ||||||||||| || || |||||||||||||| ||||| || || | |||||||| || Sbjct 7686367 CAAAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTT 7686426 Query 27642 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 27701 | |||||||| || | | ||||||||||||||||||| || ||||||| || || Sbjct 7686427 AGCATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACAC 7686486 Query 27702 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAA 27761 | |||||| || || | ||||||| | |||| ||| | ||| || | ||||| Sbjct 7686487 ACGCTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAA 7686546 Query 27762 CACGGACAAGACTCCCGTGCCCGTCCTGTC 27791 ||| |||| | || |||||||| | ||| Sbjct 7686547 CACAGACACGGTGCCGGTGCCCGTGCGGTC 7686576 >seq208 Length=5466430 Score = 136 bits (150), Expect = 3e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || |||| |||||| |||||||| || || || ||||| ||||||||||| || || Sbjct 1463615 TAGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGG 1463556 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || ||||| ||||| || || || | |||||| |||||||| || ||||| |||| Sbjct 1463555 CACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAA 1463496 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||| || |||||||| | |||||||| ||||| || ||||| || Sbjct 1463495 TACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATCAG 1463451 Score = 125 bits (138), Expect = 5e-24 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || |||| ||||| || ||||| ||||| ||||| || || || ||||||| | Sbjct 1460261 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATATACAGGTCCCAAAT 1460202 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 |||| || || ||| ||| ||| ||||||||||||||||| || || ||||||| Sbjct 1460201 CTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCGT 1460142 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||| ||||| || || | |||||||| || | |||||||| || Sbjct 1460141 CCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACC 1460093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369498616578686