Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq179 123 3e-23
seq48 102 1e-16
>seq179
Length=6459238
Score = 123 bits (136), Expect = 3e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| |||| ||||| ||||| ||||| || ||||| || ||||| | ||
Sbjct 3619869 TGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 3619928
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| || || ||||| ||||||||||| ||||||||||| || || | || ||||||
Sbjct 3619929 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAACTG 3619988
Query 77247 TTTCTGAGACCAT 77259
||||||| ||||
Sbjct 3619989 TTTCTGATGCCAT 3620001
Score = 122 bits (134), Expect = 1e-22
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| || ||||| |||||||| || |||||| ||| |||| || || || || ||||
Sbjct 3615050 TCCAACCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 3615109
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
||| |||||||| ||||| ||||| |||||||||||||||||||| || |||| || |
Sbjct 3615110 TCAAAGACTGACTCTGATCAATGAACGCTCCTCTATCAGCCGCCATCTTGATAACAGTTT 3615169
Query 76969 TTTGAGGAATTTCCCAAATAGTTTT 76993
| || | |||||||| | ||| ||
Sbjct 3615170 TCTGTGAGATTTCCCACACAGTCTT 3615194
Score = 116 bits (128), Expect = 5e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413
|| || | |||||||||||| || || | || || || | ||||| || ||||||||
Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTG-GCCAAATCACAGCTGGCTTCCAA 3625112
Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473
||||| |||||||| |||||||| |||| ||||| || || ||||| ||| ||
Sbjct 3625113 GGCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTC 3625172
Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533
||| ||||| | || ||||| ||||| |||| ||||| |||||||||||||| ||
Sbjct 3625173 AAAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGG 3625232
Query 77534 TCTATGTCTCTTATTGGA 77551
| ||| | ||||| ||
Sbjct 3625233 GCGATGACGTTTATTTGA 3625250
Score = 104 bits (114), Expect = 3e-17
Identities = 129/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798
|| |||| || | ||| |||||||| || || | |||||| ||||| || || || ||||
Sbjct 3640122 CACCACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTA 3640181
Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858
|| ||||| ||||| || | || || | || || || |||| || || || | |
Sbjct 3640182 AGATGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGT 3640241
Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATTT 78915
|||| || | || || || ||| | |||| |||||| ||||||||||||| |||||
Sbjct 3640242 CTAATTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
|| ||||||||||||||||| || ||||| || |||| ||| ||||| | || || ||
Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| || || || ||||| || ||||| ||||| || | ||| || | |||||||||
Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707
Query 78123 TC 78124
||
Sbjct 3630708 TC 3630709
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| ||||||||||| | || || || ||||| ||||||||| | ||||| || || |||
Sbjct 3636240 GTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCAGACAGAAGGTTG 3636299
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|| ||||||||||| | || || ||| || ||||| || || | || | ||| | |
Sbjct 3636300 TAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGACACTCTCATTAGC 3636359
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
|| |||||||| | |||| ||
Sbjct 3636360 ATGTGCTGAGGACGTTCAGCC 3636380
>seq48
Length=16487017
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||||||||| | ||| || ||||| || | || ||||||| || ||||| |||
Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||| | || ||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGC 7775720
Score = 102 bits (112), Expect = 1e-16
Identities = 114/152 (75%), Gaps = 3/152 (2%)
Strand=Plus/Minus
Query 47796 TAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTT 47852
|| ||||| |||| |||| |||| ||| || | || ||||| ||||||||| |
Sbjct 7780139 TAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGGACTTGACATCACTCCCATTCTC 7780080
Query 47853 TGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 47912
|||||||| || || | ||||| || || || ||||| ||||||| || ||||| |||
Sbjct 7780079 TGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCAGAGAGATATTCTCC 7780020
Query 47913 ATAAAATCAAATGGATTAACTGCATTATAAAT 47944
|||||||||||||| || |||| || ||||
Sbjct 7780019 ATAAAATCAAATGGGTTTTCTGCTCTAAAAAT 7779988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694652249515840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |