Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq179 123 3e-23 seq48 102 1e-16 >seq179 Length=6459238 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| |||| ||||| ||||| ||||| || ||||| || ||||| | || Sbjct 3619869 TGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 3619928 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || || ||||| ||||||||||| ||||||||||| || || | || |||||| Sbjct 3619929 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAACTG 3619988 Query 77247 TTTCTGAGACCAT 77259 ||||||| |||| Sbjct 3619989 TTTCTGATGCCAT 3620001 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||| || |||||| ||| |||| || || || || |||| Sbjct 3615050 TCCAACCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 3615109 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| |||||||| ||||| ||||| |||||||||||||||||||| || |||| || | Sbjct 3615110 TCAAAGACTGACTCTGATCAATGAACGCTCCTCTATCAGCCGCCATCTTGATAACAGTTT 3615169 Query 76969 TTTGAGGAATTTCCCAAATAGTTTT 76993 | || | |||||||| | ||| || Sbjct 3615170 TCTGTGAGATTTCCCACACAGTCTT 3615194 Score = 116 bits (128), Expect = 5e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 || || | |||||||||||| || || | || || || | ||||| || |||||||| Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTG-GCCAAATCACAGCTGGCTTCCAA 3625112 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 ||||| |||||||| |||||||| |||| ||||| || || ||||| ||| || Sbjct 3625113 GGCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTC 3625172 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| ||||| | || ||||| ||||| |||| ||||| |||||||||||||| || Sbjct 3625173 AAAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGG 3625232 Query 77534 TCTATGTCTCTTATTGGA 77551 | ||| | ||||| || Sbjct 3625233 GCGATGACGTTTATTTGA 3625250 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| || | ||| |||||||| || || | |||||| ||||| || || || |||| Sbjct 3640122 CACCACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTA 3640181 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 || ||||| ||||| || | || || | || || || |||| || || || | | Sbjct 3640182 AGATGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGT 3640241 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATTT 78915 |||| || | || || || ||| | |||| |||||| ||||||||||||| ||||| Sbjct 3640242 CTAATTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || ||||||||||||||||| || ||||| || |||| ||| ||||| | || || || Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| || || || ||||| || ||||| ||||| || | ||| || | ||||||||| Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707 Query 78123 TC 78124 || Sbjct 3630708 TC 3630709 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || ||||||||||| | || || || ||||| ||||||||| | ||||| || || ||| Sbjct 3636240 GTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCAGACAGAAGGTTG 3636299 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || ||| || ||||| || || | || | ||| | | Sbjct 3636300 TAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGACACTCTCATTAGC 3636359 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || |||||||| | |||| || Sbjct 3636360 ATGTGCTGAGGACGTTCAGCC 3636380 >seq48 Length=16487017 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||||||||| | ||| || ||||| || | || ||||||| || ||||| ||| Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGC 7775720 Score = 102 bits (112), Expect = 1e-16 Identities = 114/152 (75%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 47796 TAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTT 47852 || ||||| |||| |||| |||| ||| || | || ||||| ||||||||| | Sbjct 7780139 TAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGGACTTGACATCACTCCCATTCTC 7780080 Query 47853 TGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 47912 |||||||| || || | ||||| || || || ||||| ||||||| || ||||| ||| Sbjct 7780079 TGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCAGAGAGATATTCTCC 7780020 Query 47913 ATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||||||||||||| || |||| || |||| Sbjct 7780019 ATAAAATCAAATGGGTTTTCTGCTCTAAAAAT 7779988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694652249515840