Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq179 118 2e-21 seq48 107 3e-18 seq8 86.0 9e-12 >seq179 Length=6459238 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| ||| | || || || || || |||| Sbjct 3615050 TCCAACCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 3615109 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| |||||||| ||||| ||||| |||||||||||||||||||| || |||| || | Sbjct 3615110 TCAAAGACTGACTCTGATCAATGAACGCTCCTCTATCAGCCGCCATCTTGATAACAGTTT 3615169 Query 75564 TTTGAGGAATTTCCCAAATAGTTTT 75588 | || | |||||||| | ||| || Sbjct 3615170 TCTGTGAGATTTCCCACACAGTCTT 3615194 Score = 118 bits (130), Expect = 2e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| |||| ||||||||||| ||||| || ||||| || ||||| | || Sbjct 3619869 TGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 3619928 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || || ||||| |||||||| || ||||| ||||| || || | || |||||| Sbjct 3619929 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAACTG 3619988 Query 75842 TTTCTGAGACCAT 75854 ||||||| |||| Sbjct 3619989 TTTCTGATGCCAT 3620001 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||||||||| || | || | || | || | || || || || || || Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAG 3625113 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || || |||||||| |||||||| |||| ||||| || || ||||| |||| ||| Sbjct 3625114 GCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCA 3625173 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 |||||||| | || ||||| ||||| ||||| ||||| |||||||||||||| || Sbjct 3625174 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGG 3625233 Query 76130 CTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 3625234 CGATGACGTTTATTTGA 3625250 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || ||||||||||| | || || || |||||||| |||||| | ||||| || || ||| Sbjct 3636240 GTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCAGACAGAAGGTTG 3636299 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||||||| | || || |||||| || ||||| || |||| || | ||| | | Sbjct 3636300 TAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGACACTCTCATTAGC 3636359 Query 77114 ATATGCTGAGGTCGTTC 77130 || |||||||| ||||| Sbjct 3636360 ATGTGCTGAGGACGTTC 3636376 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| || || | ||| || || || || || || |||| || Sbjct 3640127 CTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGATG 3640186 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | || || |||| || || |||| || || || || |||||| Sbjct 3640187 GCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGTCTAAT 3640246 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 77510 || | || || ||||| | |||| ||||| ||||||||||||| |||| Sbjct 3640247 TCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 |||||||||||||||||||| || ||||| || |||| ||| ||||| | || || | Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 ||||| || || || ||||| || ||||| || || || | ||| || | ||||||||| Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707 Query 76718 TC 76719 || Sbjct 3630708 TC 3630709 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||||||||||| ||||||||| ||||| ||||| Sbjct 3629964 ATATAACTTCTCAAATTCTTCTCCCCAAACATCATCCAGACCAGGACACTCATTAGGACA 3630023 Query 76570 CATCAATGACCACTC 76584 ||||| ||||| || Sbjct 3630024 CATCAGAGACCAGTC 3630038 >seq48 Length=16487017 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||||||||| | ||| || ||||| || | |||||||||| || || || ||| Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 7775719 Query 46774 ACAA 46777 |||| Sbjct 7775718 ACAA 7775715 Score = 93.3 bits (102), Expect = 6e-14 Identities = 103/137 (75%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 46285 TAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTTT 46341 || ||||| |||| |||| |||| ||| || | | |||||| ||||||||| | Sbjct 7780139 TAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGGACTTGACATCACTCCCATTCTC 7780080 Query 46342 TGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 46401 || ||||| ||||| | ||||| || || || ||||| ||||||| || ||||| ||| Sbjct 7780079 TGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCAGAGAGATATTCTCC 7780020 Query 46402 ATAAAATCAAACGGATT 46418 ||||||||||| || || Sbjct 7780019 ATAAAATCAAATGGGTT 7780003 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 || |||| ||| || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || ||||| || || ||||| | ||||| || |||||||| ||| Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288 >seq8 Length=27308231 Score = 86.0 bits (94), Expect = 9e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 |||||||||||| |||||||||||||| || |||||||| ||||| | || || || Sbjct 9734893 CAAATTCTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATGTGAGAGATGAA 9734952 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 47122 ||| || ||||| | ||||||| ||||||| | | ||| ||||||| Sbjct 9734953 ATACTTCTCATCTGATTTCAGTTTGTTCCAGTGAGGAAGATCCTTTGATA 9735002 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||| | ||| |||||||||| | ||||||||| |||||||||||||| |||||| Sbjct 9734385 TCTTTGATATAGGTATCTATTAGCAAACTATACATCTCTGAATGAATGTTCTCAATAAGA 9734444 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || ||||| || || ||||| | || || | | ||| ||||| || ||| ||||| Sbjct 9734445 ATTTGAAAGCCATAGAAACAGCGCGCCTCTGGGACCTGCACCTCCTGACTAAAGCGTTC 9734503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917414337920