Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq179 118 2e-21
seq48 107 3e-18
seq8 86.0 9e-12
>seq179
Length=6459238
Score = 118 bits (130), Expect = 2e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
|||| || ||||| |||||||| || |||||| ||| | || || || || || ||||
Sbjct 3615050 TCCAACCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 3615109
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
||| |||||||| ||||| ||||| |||||||||||||||||||| || |||| || |
Sbjct 3615110 TCAAAGACTGACTCTGATCAATGAACGCTCCTCTATCAGCCGCCATCTTGATAACAGTTT 3615169
Query 75564 TTTGAGGAATTTCCCAAATAGTTTT 75588
| || | |||||||| | ||| ||
Sbjct 3615170 TCTGTGAGATTTCCCACACAGTCTT 3615194
Score = 118 bits (130), Expect = 2e-21
Identities = 106/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| |||| ||||||||||| ||||| || ||||| || ||||| | ||
Sbjct 3619869 TGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 3619928
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| || || ||||| |||||||| || ||||| ||||| || || | || ||||||
Sbjct 3619929 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAACTG 3619988
Query 75842 TTTCTGAGACCAT 75854
||||||| ||||
Sbjct 3619989 TTTCTGATGCCAT 3620001
Score = 107 bits (118), Expect = 3e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009
|| || | ||||||||| || | || | || | || | || || || || || ||
Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAG 3625113
Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069
|| || |||||||| |||||||| |||| ||||| || || ||||| |||| |||
Sbjct 3625114 GCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCA 3625173
Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129
|||||||| | || ||||| ||||| ||||| ||||| |||||||||||||| ||
Sbjct 3625174 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGG 3625233
Query 76130 CTATGTCTCTTATTGGA 76146
| ||| | ||||| ||
Sbjct 3625234 CGATGACGTTTATTTGA 3625250
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| ||||||||||| | || || || |||||||| |||||| | ||||| || || |||
Sbjct 3636240 GTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCAGACAGAAGGTTG 3636299
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|| ||||||||| | || || |||||| || ||||| || |||| || | ||| | |
Sbjct 3636300 TAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGACACTCTCATTAGC 3636359
Query 77114 ATATGCTGAGGTCGTTC 77130
|| |||||||| |||||
Sbjct 3636360 ATGTGCTGAGGACGTTC 3636376
Score = 98.7 bits (108), Expect = 1e-15
Identities = 125/172 (73%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| || | ||| |||||||| || || | ||| || || || || || || |||| ||
Sbjct 3640127 CTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGATG 3640186
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
||||||||||| || | || || |||| || || |||| || || || || ||||||
Sbjct 3640187 GCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGTCTAAT 3640246
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 77510
|| | || || ||||| | |||| ||||| ||||||||||||| ||||
Sbjct 3640247 TCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298
Score = 95.1 bits (104), Expect = 2e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657
|||||||||||||||||||| || ||||| || |||| ||| ||||| | || || |
Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647
Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717
||||| || || || ||||| || ||||| || || || | ||| || | |||||||||
Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707
Query 76718 TC 76719
||
Sbjct 3630708 TC 3630709
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569
||||||| |||||||| ||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 3629964 ATATAACTTCTCAAATTCTTCTCCCCAAACATCATCCAGACCAGGACACTCATTAGGACA 3630023
Query 76570 CATCAATGACCACTC 76584
||||| ||||| ||
Sbjct 3630024 CATCAGAGACCAGTC 3630038
>seq48
Length=16487017
Score = 107 bits (118), Expect = 3e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||||||||| | ||| || ||||| || | |||||||||| || || || |||
Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | || ||||| ||||||||||| || ||||| ||||| || || ||
Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 7775719
Query 46774 ACAA 46777
||||
Sbjct 7775718 ACAA 7775715
Score = 93.3 bits (102), Expect = 6e-14
Identities = 103/137 (75%), Gaps = 3/137 (2%)
Strand=Plus/Minus
Query 46285 TAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTTT 46341
|| ||||| |||| |||| |||| ||| || | | |||||| ||||||||| |
Sbjct 7780139 TAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGGACTTGACATCACTCCCATTCTC 7780080
Query 46342 TGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 46401
|| ||||| ||||| | ||||| || || || ||||| ||||||| || ||||| |||
Sbjct 7780079 TGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCAGAGAGATATTCTCC 7780020
Query 46402 ATAAAATCAAACGGATT 46418
||||||||||| || ||
Sbjct 7780019 ATAAAATCAAATGGGTT 7780003
Score = 91.5 bits (100), Expect = 2e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950
|| |||| ||| || || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333
Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
|| ||||| || || ||||| | ||||| || |||||||| |||
Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288
>seq8
Length=27308231
Score = 86.0 bits (94), Expect = 9e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072
|||||||||||| |||||||||||||| || |||||||| ||||| | || || ||
Sbjct 9734893 CAAATTCTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATGTGAGAGATGAA 9734952
Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 47122
||| || ||||| | ||||||| ||||||| | | ||| |||||||
Sbjct 9734953 ATACTTCTCATCTGATTTCAGTTTGTTCCAGTGAGGAAGATCCTTTGATA 9735002
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950
||||| | ||| |||||||||| | ||||||||| |||||||||||||| ||||||
Sbjct 9734385 TCTTTGATATAGGTATCTATTAGCAAACTATACATCTCTGAATGAATGTTCTCAATAAGA 9734444
Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009
|| ||||| || || ||||| | || || | | ||| ||||| || ||| |||||
Sbjct 9734445 ATTTGAAAGCCATAGAAACAGCGCGCCTCTGGGACCTGCACCTCCTGACTAAAGCGTTC 9734503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712917414337920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |