Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq71 107 2e-18 seq48 91.5 2e-13 seq8 82.4 8e-11 >seq71 Length=13082442 Score = 107 bits (118), Expect = 2e-18 Identities = 224/328 (68%), Gaps = 17/328 (5%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||||||| | |||||| ||||| | ||| || ||||||| ||| || || Sbjct 3040041 TCATCTTTACTAATAAGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTG 3039985 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | | || || | ||||||| | || |||||||| |||||||| Sbjct 3039984 AGCCAGAATATCGATGTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCT 3039928 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 || | || | |||| ||||||| | | || |||||| ||||| || Sbjct 3039927 ACCACACATTCACCATATGTTGCTTCTTTGTCTCCAATCCAGCACA--GTCCA----GCT 3039874 Query 23713 TTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTA 23772 ||| ||| ||||| | ||||||||| | || |||||||| | |||||| Sbjct 3039873 TTCTTTTTAACACAAGGTAGTGTTTCAATGCCATTGAAGAGAAAT-TCCTTTCTTTTGAG 3039815 Query 23773 TCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCA 23832 ||| | ||||| || ||||| || | |||| |||||||||||| | ||||| | | | Sbjct 3039814 TCTTTAATATAAGTGTCAATAAGGAGACTA--CATTTCAGAATG--TGTTTTCCGTGGTA 3039759 Query 23833 ATCTGAAACCCATAAAAACATCTAGCTT 23860 || || || ||||| ||||| | |||| Sbjct 3039758 ATTTGGAAGCCATAGAAACAGCAGGCTT 3039731 >seq48 Length=16487017 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 ||||| || ||||| || | |||||||||||||||||| || ||||| |||||||| ||| Sbjct 7772386 ATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGA 7772327 Query 23839 AACCCATAAAAACATCTAGCTTC 23861 || ||||| ||||| | |||||| Sbjct 7772326 AAGCCATAGAAACAGCGAGCTTC 7772304 >seq8 Length=27308231 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 23773 TCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCA 23832 ||| | ||||| ||||| ||||| ||||||||||| || |||||||| || |||||| | Sbjct 9734385 TCTTTGATATAGGTATCTATTAGCAAACTATACATCTCTGAATGAATGTTCTCAATAAGA 9734444 Query 23833 ATCTGAAACCCATAAAAACA 23852 || ||||| ||||| ||||| Sbjct 9734445 ATTTGAAAGCCATAGAAACA 9734464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521475575548400