Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq17 143 4e-29 seq178 114 2e-20 >seq17 Length=22518727 Score = 143 bits (158), Expect = 4e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 |||||||||||||||||| |||| |||||||| ||||||| || ||| |||| Sbjct 12062828 CTTACCCCATGTCCCAGTGCTTTTGTGAAGGCTGGGCCTCTGTGATGGTCTGTCTTAAAG 12062887 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 |||||||| |||||||||||| |||| || |||||||| | || ||||| |||||||| Sbjct 12062888 AACTGGTGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATCA 12062947 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTTT 9829 ||| | || |||||| |||||| ||||||||||| | | | || || |||| | Sbjct 12062948 GGAATAAACTTCCTCCTCAGAAGAAATTTTTCCACAATCTCTTTGGATTCAGGAAGCTGT 12063007 Query 9830 GTTTTACCT 9838 |||||||| Sbjct 12063008 TTTTTACCT 12063016 Score = 125 bits (138), Expect = 1e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| ||| |||||| |||||||| ||||| || | || ||||| Sbjct 12061307 GTCTGGAACAACTGCTCATCATCCCATTCAGGATGTTCCTGTTTAAGGATGTCACACACT 12061366 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | ||| ||||||| ||||| || || || |||||||| | || || ||||||||||| Sbjct 12061367 CGGTTATGTTCCCGAAGCCATATTGTAGCATACATCATCAAACCTGGAACCAGGCCAAAT 12061426 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | ||||| || ||||| | | || | || || || | || || |||||||| | Sbjct 12061427 ACTTCTTGCCCAACAGCAAATCTCAGATGCTCAGGGACATGAGGTGGGTAGATCATTTCT 12061486 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 |||| ||||| || |||| ||||| | ||| || ||||| Sbjct 12061487 GCCTGCGTATCTTTCACTAAGGGCGGATATACTTCTCCATCAAT 12061530 Score = 98.7 bits (108), Expect = 1e-15 Identities = 194/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || | |||| ||| ||||| || | || | |||| || Sbjct 12059243 AAGGGACATCCCTTTACATTATTGCAGATTAGTGACTGGATTGAGGCTGTATTGATAATT 12059302 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 | || || ||||| || || ||||| ||||||||||| | ||||| ||||| | Sbjct 12059303 TCAAAACCTCTATCTCCACCAAAAGTGCTAGGCTTCCAGTAGTCAGGGGAACAGATTGGG 12059362 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || ||||||| |||||||| ||||| || || || | || | ||| | || || ||| Sbjct 12059363 TTACCCATGAGTCCTTTGAGTGAGAAGGGTGCTCCAAGTTCAACCATGGTTTCTCCAAAG 12059422 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||| || || || |||| || | | || | |||| ||||| || || | Sbjct 12059423 ATGGCACCTGGGCGAGGTCTTTCTACTAGCAGACCAGGATACAACTCCATAGAATCAATA 12059482 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || || | || || || ||||| || || || |||||||| Sbjct 12059483 TCACCATAGACAGCTTCCAGCTCAGCAGCCATTTCTTTCTCTCCTGT 12059529 >seq178 Length=6490125 Score = 114 bits (126), Expect = 2e-20 Identities = 209/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338 || || || ||||| | | | | ||||| ||||| ||| ||| ||||| ||| Sbjct 5540750 TCAGGTACACGGAATGAGACATAGGGACATGTTTTGACATTGAGACAAACTAGTTTCTGC 5540809 Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAG 8398 | || || ||||||| || ||| || || || || || ||||| ||||||||| Sbjct 5540810 AATGTGGCTGTCTTGACAATATTGAAGCCAGTCTCACCACCAAATGTGCTTGGCTTCCAG 5540869 Query 8399 TACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAAC 8458 ||| | || || || ||| |||| ||| ||| |||||||||||||| || ||||| | | Sbjct 5540870 TACTCAGGAGAACATATGGGGTTCCCCAAGAGCCCTTTGAGGGAGAAGGGGGCCCCAATC 5540929 Query 8459 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8518 || | |||||||| || ||||| | || || | | || || | | || || | | Sbjct 5540930 TCCACCATGCTCTCCCCAAAGATAGAATTAGGCAGAGATTTCTCTAGAAGTAAGCCTGGG 5540989 Query 8519 TACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTT 8578 || | ||||| ||| |||| |||||| || || || || || || | ||| ||| Sbjct 5540990 TAGAACTCCAAAGCATCGATGTCTCCATATAGCTCCTCCAGCTCTGCTGAATTCTGCTTC 5541049 Query 8579 TCTCCT 8584 |||||| Sbjct 5541050 TCTCCT 5541055 Score = 96.9 bits (106), Expect = 5e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| | | ||| ||| ||| ||||| ||| | || || ||||||| || | Sbjct 5477510 GGACATACTTGGACATTGAGACAAACTAGCTTCTGCAACGTGGCTGTCTTGACAATATTG 5477569 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || || || || || ||||| |||||||||||| | || || || ||| |||| Sbjct 5477570 AAGCCAGTCTCACCACCAAATGTGCTTGGCTTCCAGTACTCAGGAGAACATATGGGGTTC 5477629 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||| ||||||| |||||| || ||||| | ||| | |||||||| || ||||| Sbjct 5477630 CCCAAGAGCCCTTTGAAGGAGAAAGGGGCCCCAATCTCCACCATGCTCTCCCCAAAGATA 5477689 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | || || | | || || | | || || | ||| | ||||| || || | |||| Sbjct 5477690 GAATTAGGCAGAGATTTCTCTAGAAGTAAGCCTGGGTAGAACTCCAAGGCATCAATGTCT 5477749 Query 8543 CCGTAAAG 8550 || || || Sbjct 5477750 CCATACAG 5477757 Score = 86.0 bits (94), Expect = 9e-12 Identities = 173/255 (68%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||||| || ||||| || || ||||| ||| |||| || || Sbjct 5550529 TCACCTATGAGGATGAGTCTGGTCGTCTGAAAGAGCTGCTCATCATTCCAGGTGGGGTGC 5550588 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | || | || || || | ||||||||||| |||||||| || || |||| | Sbjct 5550589 TCAGCTCGCAAGAGGTCACAGACACGGTTGTGTTCCCGAAGCCAGATTGTAGCATACACC 5550648 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || | || ||||| |||| || || || |||| | |||| ||| Sbjct 5550649 ATGAGGCCTGGGAGCAACCCAAACACCTCCTGGCCCACGGCCATCTGTTGAGTTTCAGGC 5550708 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTG--ACCGAGGGGGGATACATTT 9469 || | | ||| || |||||| ||| || |||| | || || || |||||||| | Sbjct 5550709 ACATTTGCAGGGTACTTCATGTACACATG--AGTCTCAGCCACTGATGGTGGATACATCT 5550766 Query 9470 CACCGTCAATCATCT 9484 | || || | ||||| Sbjct 5550767 CCCCATCCACCATCT 5550781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716859720410240