Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq17 143 4e-29
seq178 114 2e-20
>seq17
Length=22518727
Score = 143 bits (158), Expect = 4e-29
Identities = 145/189 (77%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709
|||||||||||||||||| |||| |||||||| ||||||| || ||| ||||
Sbjct 12062828 CTTACCCCATGTCCCAGTGCTTTTGTGAAGGCTGGGCCTCTGTGATGGTCTGTCTTAAAG 12062887
Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769
|||||||| |||||||||||| |||| || |||||||| | || ||||| ||||||||
Sbjct 12062888 AACTGGTGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATCA 12062947
Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTTT 9829
||| | || |||||| |||||| ||||||||||| | | | || || |||| |
Sbjct 12062948 GGAATAAACTTCCTCCTCAGAAGAAATTTTTCCACAATCTCTTTGGATTCAGGAAGCTGT 12063007
Query 9830 GTTTTACCT 9838
||||||||
Sbjct 12063008 TTTTTACCT 12063016
Score = 125 bits (138), Expect = 1e-23
Identities = 162/224 (72%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| ||||| ||| |||||| |||||||| ||||| || | || |||||
Sbjct 12061307 GTCTGGAACAACTGCTCATCATCCCATTCAGGATGTTCCTGTTTAAGGATGTCACACACT 12061366
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
| ||| ||||||| ||||| || || || |||||||| | || || |||||||||||
Sbjct 12061367 CGGTTATGTTCCCGAAGCCATATTGTAGCATACATCATCAAACCTGGAACCAGGCCAAAT 12061426
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
| ||||| || ||||| | | || | || || || | || || |||||||| |
Sbjct 12061427 ACTTCTTGCCCAACAGCAAATCTCAGATGCTCAGGGACATGAGGTGGGTAGATCATTTCT 12061486
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479
|||| ||||| || |||| ||||| | ||| || |||||
Sbjct 12061487 GCCTGCGTATCTTTCACTAAGGGCGGATATACTTCTCCATCAAT 12061530
Score = 98.7 bits (108), Expect = 1e-15
Identities = 194/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359
|| ||||| ||||| || || | |||| ||| ||||| || | || | |||| ||
Sbjct 12059243 AAGGGACATCCCTTTACATTATTGCAGATTAGTGACTGGATTGAGGCTGTATTGATAATT 12059302
Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419
| || || ||||| || || ||||| ||||||||||| | ||||| ||||| |
Sbjct 12059303 TCAAAACCTCTATCTCCACCAAAAGTGCTAGGCTTCCAGTAGTCAGGGGAACAGATTGGG 12059362
Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479
|| ||||||| |||||||| ||||| || || || | || | ||| | || || |||
Sbjct 12059363 TTACCCATGAGTCCTTTGAGTGAGAAGGGTGCTCCAAGTTCAACCATGGTTTCTCCAAAG 12059422
Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539
||||| || || || |||| || | | || | |||| ||||| || || |
Sbjct 12059423 ATGGCACCTGGGCGAGGTCTTTCTACTAGCAGACCAGGATACAACTCCATAGAATCAATA 12059482
Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586
|| || || | || || || ||||| || || || ||||||||
Sbjct 12059483 TCACCATAGACAGCTTCCAGCTCAGCAGCCATTTCTTTCTCTCCTGT 12059529
>seq178
Length=6490125
Score = 114 bits (126), Expect = 2e-20
Identities = 209/306 (68%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338
|| || || ||||| | | | | ||||| ||||| ||| ||| ||||| |||
Sbjct 5540750 TCAGGTACACGGAATGAGACATAGGGACATGTTTTGACATTGAGACAAACTAGTTTCTGC 5540809
Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAG 8398
| || || ||||||| || ||| || || || || || ||||| |||||||||
Sbjct 5540810 AATGTGGCTGTCTTGACAATATTGAAGCCAGTCTCACCACCAAATGTGCTTGGCTTCCAG 5540869
Query 8399 TACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAAC 8458
||| | || || || ||| |||| ||| ||| |||||||||||||| || ||||| | |
Sbjct 5540870 TACTCAGGAGAACATATGGGGTTCCCCAAGAGCCCTTTGAGGGAGAAGGGGGCCCCAATC 5540929
Query 8459 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8518
|| | |||||||| || ||||| | || || | | || || | | || || | |
Sbjct 5540930 TCCACCATGCTCTCCCCAAAGATAGAATTAGGCAGAGATTTCTCTAGAAGTAAGCCTGGG 5540989
Query 8519 TACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTT 8578
|| | ||||| ||| |||| |||||| || || || || || || | ||| |||
Sbjct 5540990 TAGAACTCCAAAGCATCGATGTCTCCATATAGCTCCTCCAGCTCTGCTGAATTCTGCTTC 5541049
Query 8579 TCTCCT 8584
||||||
Sbjct 5541050 TCTCCT 5541055
Score = 96.9 bits (106), Expect = 5e-15
Identities = 170/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
||||| | | ||| ||| ||| ||||| ||| | || || ||||||| || |
Sbjct 5477510 GGACATACTTGGACATTGAGACAAACTAGCTTCTGCAACGTGGCTGTCTTGACAATATTG 5477569
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| || || || || || ||||| |||||||||||| | || || || ||| ||||
Sbjct 5477570 AAGCCAGTCTCACCACCAAATGTGCTTGGCTTCCAGTACTCAGGAGAACATATGGGGTTC 5477629
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
||| ||| ||||||| |||||| || ||||| | ||| | |||||||| || |||||
Sbjct 5477630 CCCAAGAGCCCTTTGAAGGAGAAAGGGGCCCCAATCTCCACCATGCTCTCCCCAAAGATA 5477689
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
| || || | | || || | | || || | ||| | ||||| || || | ||||
Sbjct 5477690 GAATTAGGCAGAGATTTCTCTAGAAGTAAGCCTGGGTAGAACTCCAAGGCATCAATGTCT 5477749
Query 8543 CCGTAAAG 8550
|| || ||
Sbjct 5477750 CCATACAG 5477757
Score = 86.0 bits (94), Expect = 9e-12
Identities = 173/255 (68%), Gaps = 4/255 (2%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || | |||||||| || ||||| || || ||||| ||| |||| || ||
Sbjct 5550529 TCACCTATGAGGATGAGTCTGGTCGTCTGAAAGAGCTGCTCATCATTCCAGGTGGGGTGC 5550588
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| | || | || || || | ||||||||||| |||||||| || || |||| |
Sbjct 5550589 TCAGCTCGCAAGAGGTCACAGACACGGTTGTGTTCCCGAAGCCAGATTGTAGCATACACC 5550648
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
||||| || || | || ||||| |||| || || || |||| | |||| |||
Sbjct 5550649 ATGAGGCCTGGGAGCAACCCAAACACCTCCTGGCCCACGGCCATCTGTTGAGTTTCAGGC 5550708
Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTG--ACCGAGGGGGGATACATTT 9469
|| | | ||| || |||||| ||| || |||| | || || || |||||||| |
Sbjct 5550709 ACATTTGCAGGGTACTTCATGTACACATG--AGTCTCAGCCACTGATGGTGGATACATCT 5550766
Query 9470 CACCGTCAATCATCT 9484
| || || | |||||
Sbjct 5550767 CCCCATCCACCATCT 5550781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716859720410240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |