Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7675 122 7e-23 seq6894 98.7 8e-16 >seq7675 Length=222078 Score = 122 bits (134), Expect = 7e-23 Identities = 363/553 (66%), Gaps = 19/553 (3%) Strand=Plus/Plus Query 18807 TACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTA 18866 || |||||||||| |||||||||||| | ||||||||||| | || | |||| Sbjct 43122 TATGGCTTCCAGTAGAGACATTTTGGGTCAGAATATAAAGAAATGAACACAGATTATTCC 43181 Query 18867 CAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGC 18926 |||| |||| ||||| || |||| | || || ||||| ||||| ||||| || Sbjct 43182 AGGCAAAGAATAGATCAACTACAAAAATTAATTGACACAATCAAAACCAACCCTGA---T 43238 Query 18927 CGACGAATGATTATATCGTCTTGGAAT--------CCAAAGG-ATATCCCCTTAATGGTA 18977 | ||| ||| || | ||| |||| | ||||| || | || | |||| | Sbjct 43239 GAAAGAAGGATCATGTGTGCTTAGAATTCTAAATCCTAAAGGAATCTTCCTCTGATGGCA 43298 Query 18978 CTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAA 19037 || |||| |||||||| | ||| |||| | || ||| || | | || || | Sbjct 43299 CTTCCTCTGTGTCACACTCTCTGTTAGTTCTTTGTATTAAATGGCAAGCTCTCTTGTTAG 43358 Query 19038 GTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCA 19097 |||| || ||||| || ||| ||| || || | | |||||||||||| | ||| | Sbjct 43359 TTATATCAAAGATCTGGAGATGAGGGTCTCAGGATGCTGTTCAACATTGCCAGTTATTCC 43418 Query 19098 CTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCAT-AC 19156 || || |||||||| | || || || | ||| || || | || || || | ||| | Sbjct 43419 CTGCTCACCTACATGATGGCCCAAGTCAAAGGCCTAAAGCCAGGTGAATTTGTACATAAT 43478 Query 19157 AATGGGGGATGCACATATTTACTTGAATCATATAGATGCT-TTAAAAGTGCAGCT--AGC 19213 |||| ||| | ||||| ||| |||||| ||| | ||| | ||| | ||| | ||| Sbjct 43479 TCTGGGAGATACTCATATATACCTGAATCGTAT-TAAGCTACTGAAAATTCAGTTTCAGC 43537 Query 19214 TCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATAAACGA 19273 || |||| |||||| ||| || |||||| || |||| || | ||| | || Sbjct 43538 AAGA--ACCAAGACCTTTCCCTAAGCTCAAAATTCTTTGAAAAGTTGAAACTATTGATGA 43595 Query 19274 CTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATGGA 19333 || || || || || | |||| | || ||||| || || | | |||||||| Sbjct 43596 TTTCAAGGCCGAGGACTTCCTTATTGAAGACTACAATCCTCATCCAGCTATTAAAATGGA 43655 Query 19334 AATGGCTCTTTAA 19346 |||||| | ||| Sbjct 43656 GATGGCTGTCTAA 43668 >seq6894 Length=939852 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| | | |||||||||||| | | |||||||| || | || || || | || Sbjct 59275 ATGGCATTGCCTCCATGTCACGCTCTCTGTCAGTTCTATATACTGAATGGCGAGCTCTCT 59334 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || || |||| || |||| || ||||||||||| ||||| |||||||||||||| | Sbjct 59335 TGTCAGTTATATCAACGATCTGGAGATATGGGCCTCGGGGTGCCGTTCAACATTGCCAGT 59394 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 ||| | || || |||||||| | || ||||| ||||| || || Sbjct 59395 TATTCCCTGCTCACCTACATGATTGCTCATGTCACAGGTCTGAA 59438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399328844212830