Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq22335 187 2e-42 seq7675 136 3e-27 seq22484 100 2e-16 seq6894 93.3 3e-14 seq6877 93.3 3e-14 >seq22335 Length=4597781 Score = 187 bits (206), Expect = 2e-42 Identities = 392/576 (68%), Gaps = 20/576 (3%) Strand=Plus/Plus Query 3967 TATTAATGAT-TCTTCT-CATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCA 4024 ||||||| || | |||| || ||||||||||||| |||| ||| ||| ||| | || | Sbjct 286483 TATTAATCATGTTTTCTTCAGATACTTCAAATTTATACTGAATGTCTTTTTCTACATGGA 286542 Query 4025 CATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTG 4084 || || ||||| || |||| ||| | | || ||| |||| | ||| |||| || || Sbjct 286543 TATAAGTAAGAATACCTGGACATTGTGGGAGAAATTTATATTAATTTAGGTCAATTTGTG 286602 Query 4085 -------GAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTA 4137 | || || |||| ||||| ||||||| || || |||| |||||||| Sbjct 286603 TGTATGTGGGGGAATGTATCACTCTCAAATTCTTGCAAAATTCTTGTCA-AAACAGTTGT 286661 Query 4138 AGATCGCATGGATAACT-CATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGAC 4196 ||| | ||| || ||| || | ||||||| | ||||||||| | | | | Sbjct 286662 TGAT-GACCAGATTTCTGCATGGC----TGATACACAAAGCTACCTCCATCCACCAAAAT 286716 Query 4197 CATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACT 4256 || |||||| |||||||||| |||| | || | || | ||| |||||||| ||| Sbjct 286717 CAGGTCTACCTTATTTGCTAGTTCTAGACATT---TGAGGTCTAATGCATCATCCTGACT 286773 Query 4257 CTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATT 4316 ||||| ||| ||||| ||| | | ||| | ||||| |||| |||||||| | ||| Sbjct 286774 TTTAGCAAAATAATGAACTCCAGGAGGAGGTTCCTTCAGTTATCTGCTGAGAGTTAAATT 286833 Query 4317 AATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCAT 4376 | | || ||||||| || | |||||||||| |||| | || || |||| || |||| Sbjct 286834 ATTCCTATCTTTTAAGGGTCAGTTCTTCTCAAGAATGGGAAATCATATCTTCTTCTCCAT 286893 Query 4377 AATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTT 4436 | || || ||| |||||| || ||| |||| | || ||||| || || | | | Sbjct 286894 TACCAATAGATT-TGTTTACCTTCTACTGAAGGAGCTCTATTCATTTGCTGTAACTATGT 286952 Query 4437 AAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTG 4496 || |||||| | ||| |||||||| ||||| |||| || | ||||| || || Sbjct 286953 GAATTCATTCCTCAGTGGGGGCCAAGGGAAGTTTCCTTTCTTATCTATGCCTGAATTCTG 287012 Query 4497 AGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 ||||| ||| ||||| | | || || ||||| Sbjct 287013 GAATACAGTGACATTGCAGCTGATTGGATGGACCAT 287048 >seq7675 Length=222078 Score = 136 bits (150), Expect = 3e-27 Identities = 385/581 (66%), Gaps = 19/581 (3%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 ||| |||||||| | ||||||||| || || || || |||| ||| | | | ||| Sbjct 43668 TTAGACAGCCATCTCCATTTTAATAGCTGGATGAGGATTGTAGTCTTCAATAAGGAAGTC 43609 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || || || || |||||||| | ||| |||| | || | | || | || || || Sbjct 43608 CTCGGCCTTGAAATCATCAATAGTTTCAACTTTTCAAAGAATTTTGAGCTTAGGGAAAGG 43549 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAG-AGCATCAATGTGATCTACATAGATGTGAG 101711 ||| || | || ||||| ||||| || ||| | ||| ||| | || || |||| Sbjct 43548 TCTTGGTTCTTGCTGAAACTGAATTTTCAGTAGCTT-AATACGATTCAGGTATATATGAG 43490 Query 101712 CATCTCCTATAGT-ATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATG 101770 |||||| | | | ||| | ||| || || ||| ||| |||| || || |||||| Sbjct 43489 TATCTCCCAGAATTATGTACAAATTCACCTGGCTTTAGGCCTTTGACTTGGGCCATCATG 43430 Query 101771 CAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCAT-ATCAGCTGA 101829 | || | || ||||| || |||||||| || ||| |||| | || | ||| | || Sbjct 43429 TAGGTGAGCAGGGAATAACTGGCAATGTTGAACAGCA-TCCTGAGACCCTCATCTCCAGA 43371 Query 101830 TCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATG 101889 ||||||||| | | ||| || ||||| |||| | ||| | || | || | || Sbjct 43370 TCTTTGATATAACTAACAAGAGAGCTTGCCATTTAATACAAAGAACTAACAGAGAGTGTG 43311 Query 101890 ACAAGGCGGCAACACCATTTTAGGAA------TGTCTGA---AACATTCCAAGCACACAT 101940 ||| | || | |||| ||||| | | || | |||| |||||||||| Sbjct 43310 ACACAGAGGAAGTGCCATCAGAGGAAGATTCCTTTAGGATTTAGAATTCTAAGCACACAT 43251 Query 101941 TAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTC 102000 |||||||| || |||||| ||||| || || ||||| || | || || ||| || Sbjct 43250 ---GATCCTTCTTTCATCAGGGTTGGTTTTGATTGTGTCAATTAATTTTTGTAGTTGATC 43194 Query 102001 AACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCC 102059 | || || | |||||| | | | | |||||||||||| || ||||| ||| Sbjct 43193 TATTCTTTGCCTGGAATAATCTGTGTTC-ATTTCTTTATATTCTGACCCAAAATGTCTCT 43135 Query 102060 ACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTG 102100 |||| || |||||||| || || | ||||||||| || ||| Sbjct 43134 ACTGGAAGCCATACACTGGCCCCAAATCTCCTTCCTCCCTG 43094 >seq22484 Length=3615887 Score = 100 bits (110), Expect = 2e-16 Identities = 136/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 26958 GGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTAGGG 27017 || || || || ||||| ||||||||||||||||||||||| || | || ||| | | | Sbjct 971583 GGGGTGACACAGGTGCATCCTACAGTCACTAGCATCTTCTCCAGTCGGAAGGAAGTGGAG 971524 Query 27018 CAGGGTTG----ATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTT 27073 || | ||| || | || | | |||| || ||||| ||| |||| ||||| ||||| Sbjct 971523 CA-GTTTGCAATATCTCTTTGGAGGACCA--AG-ATCTCCTGTCGGATGGGGACGGAGTT 971468 Query 27074 CATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTC 27133 || || || ||| || ||||| |||||||| | || ||| ||| || ||| | || || Sbjct 971467 CAAGTTGTGGTCCACTTTCCCCTCAGCATTGATGCAACCTGAGTGACGGCACCTAGCCTC 971408 Query 27134 CCAAAT 27139 ||| || Sbjct 971407 CCAGAT 971402 >seq6894 Length=939852 Score = 93.3 bits (102), Expect = 3e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 |||||||||||||||||| | || | || ||||| || |||||||| || ||||| || Sbjct 59429 GTGACATGAGCAATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAACGGCACCCCG 59370 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAG-ACATA 101871 | |||||||| | |||| |||||| | ||||| || |||| |||| ||| | ||| Sbjct 59369 AGGCCCATATCTCCAGATCGTTGATATAACTGACAAGAGAGCTCGCCAT-TCAGTATATA 59311 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTG 101921 || |||| | | ||||| || ||||| |||| ||||| |||| Sbjct 59310 GAACTGACAGAGAGCGTGACATGGAGGCAATGCCATCAGAGGAAGATCTG 59261 >seq6877 Length=2727454 Score = 93.3 bits (102), Expect = 3e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||||| |||||||| |||||||||||| || ||||| ||||| ||||||| Sbjct 2236264 AAGTTTATATTTCTTTAGATCAATTTCTGGAAAAAATGTATCACACTCAAATTCTTGCAA 2236205 Query 4116 GATCCTAGTCACAAACAGT 4134 || || |||||||||||| Sbjct 2236204 AATTCTTGTCACAAACAGT 2236186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | ||||| || |||| ||||| || | ||||||||| Sbjct 2213327 CTTCAGTTCTCTACTGAGAACTAAGTTAATCCTATCTTTCAAAGGTCGATGCTTCTCAGG 2213268 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || || || ||||| |||| | |||||||||| ||| Sbjct 2213267 AATGGAGAACCAGGTTTTCTTTCCCATTATCAACAGATTCTGTTTACCTG 2213218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361092815507474