Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq22615 84.2 2e-11 seq7240 84.2 2e-11 >seq22615 Length=203576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| || |||||||| ||| ||| ||| ||| Sbjct 192870 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 192929 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||| || ||||||||||| | ||| |||||| Sbjct 192930 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAG 192989 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| || || || ||||||||| || || | || ||||| Sbjct 192990 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 193049 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || || ||| |||| Sbjct 193050 ATCCAGAAGGAATCCACCCTGCACTTGGT 193078 >seq7240 Length=45712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || ||||| ||||| ||||| ||| ||| || ||| Sbjct 6232 ATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTTGAAGTAGAGCCCAGT 6291 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||| || ||||||||||| | ||| |||||| Sbjct 6292 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAG 6351 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || ||||| || || || ||||||||| || || | || ||||| Sbjct 6352 CAGAGATTAATTTTTGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 6411 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || |||||||||||||| || ||| |||| Sbjct 6412 ATCCAGAAGGAATCTACCCTGCACTTGGT 6440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428148203308970