Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq27282 131 2e-25 >seq27282 Length=2735080 Score = 131 bits (144), Expect = 2e-25 Identities = 209/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 10060 AAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGG 10119 |||||||| ||||| ||||||||||||||||||||||| | | || ||| |||| ||| Sbjct 752376 AAGAAGTATAAGGCAGTCAGGCTCATCTTTGTCATCATGATTGTCTTCTTTCTTTTCTGG 752435 Query 10120 ACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAG 10179 || || || || || || || || ||| | ||||| ||| | || |||| | | Sbjct 752436 ACCCCTTATAATCTTACCCTTCTTCTCTCTGCTTTTCAAGCATCTTTTTTTAAGGGGGAC 752495 Query 10180 TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACA 10239 |||| |||| | |||| |||| ||| |||| || | ||||| || Sbjct 752496 TGTGAGAGAAGCAAACAACTGGATGTGGCAATGCAAGTAACTGAAGTGATTGCCTATACT 752555 Query 10240 CACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTG 10299 || ||||| ||||||| ||||| || || ||||| ||||| ||| | | | |||| Sbjct 752556 CATTGTTGTGTCAACCCCGTGATTTATGCCTTCGTTGGGGAACGATTTCGGAAATACCTC 752615 Query 10300 TACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCT 10359 | ||||||||||||| || | | ||| | || ||||| || |||||||||||| || Sbjct 752616 TGTCACTTCTTCCACAGACACATCGTGATCCATCTGTGCAACTATATCCCCTTCCTGCCT 752675 Score = 131 bits (144), Expect = 2e-25 Identities = 209/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 176946 AAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGG 177005 |||||||| ||||| ||||||||||||||||||||||| | | || ||| |||| ||| Sbjct 752376 AAGAAGTATAAGGCAGTCAGGCTCATCTTTGTCATCATGATTGTCTTCTTTCTTTTCTGG 752435 Query 177006 ACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAG 177065 || || || || || || || || ||| | ||||| ||| | || |||| | | Sbjct 752436 ACCCCTTATAATCTTACCCTTCTTCTCTCTGCTTTTCAAGCATCTTTTTTTAAGGGGGAC 752495 Query 177066 TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACA 177125 |||| |||| | |||| |||| ||| |||| || | ||||| || Sbjct 752496 TGTGAGAGAAGCAAACAACTGGATGTGGCAATGCAAGTAACTGAAGTGATTGCCTATACT 752555 Query 177126 CACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTG 177185 || ||||| ||||||| ||||| || || ||||| ||||| ||| | | | |||| Sbjct 752556 CATTGTTGTGTCAACCCCGTGATTTATGCCTTCGTTGGGGAACGATTTCGGAAATACCTC 752615 Query 177186 TACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCT 177245 | ||||||||||||| || | | ||| | || ||||| || |||||||||||| || Sbjct 752616 TGTCACTTCTTCCACAGACACATCGTGATCCATCTGTGCAACTATATCCCCTTCCTGCCT 752675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589811457214960