Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq7172 196 6e-45 >seq7172 Length=5071956 Score = 196 bits (216), Expect = 6e-45 Identities = 219/293 (75%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 83104 GCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGC 83163 ||||||||| ||| ||| || |||| |||||||| |||||||| || ||||| | Sbjct 2096243 GCTGTACCTCTTCACCGGCACACCATCAGGACCCACCAGAAACTTCTCAAAATTCCAAGA 2096302 Query 83164 CACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT 83223 || || || | |||||||||||||||| |||| || ||||||| ||| || | | Sbjct 2096303 GACATCATTCCTGCACACTGGAGACCAGATGATGAACTTGGGGTCGGTCATTAGAGAAAT 2096362 Query 83224 CATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT 83283 || || || || |||||||| ||||| ||||||||||| ||||| || || ||| | Sbjct 2096363 GGCATCATCACTTGGGGCCGGCAGTGCCTCCCGTAGGAAGGCAAAGAGAGGGTGAGCCTT 2096422 Query 83284 TGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGG 83343 | || || ||||| |||||||| |||||||| ||||| ||||| || ||||| || || Sbjct 2096423 CTCTCCATTCACCTCACACTTCTCAAAGAGCATGAAGTTAGGCTCAAACCCGTTGCCCGG 2096482 Query 83344 ACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGT 83396 |||||| ||||||||| || ||||| |||||| | | || ||||||| Sbjct 2096483 TCGGACGAATTTCAGGGAATTCAGAATCTCTTCATTCTTGCCATTCTCCTGGT 2096535 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||||||||| |||||||| || ||||| || ||||| | | || ||| | || ||| Sbjct 2098540 CCTGGTGACCAAACTGGTTGCAGGGGAAGCCGAGCACGGCGAAGCCGCGATCGCCGTGGC 2098599 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || ||||||||||||||||||| ||||| || ||||||||| | |||||||||||||| | Sbjct 2098600 GCTGCTGCAGCTCGTTCATCTGCGTGTAGTCGCGGACCGTGGTCCCTCAGAGGGACGCCA 2098659 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | | || | | |||||| | || || | | Sbjct 2098660 CATTCTCGATGAGCAGAACCTTGCCCCGCAGGGAGGCCAGGCTCACCAGCTCCCCGCTGC 2098719 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGC 83619 | | |||| || |||||||||| ||| || | | | |||||||| Sbjct 2098720 CCAGCAGGCGAGCGGAGAAGGCGTGCACGGAGCGCGGGACGGCCGCGGC 2098768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608523039298960