Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq22597 122 7e-23 seq7240 109 5e-19 seq6982 82.4 6e-11 >seq22597 Length=1249212 Score = 122 bits (134), Expect = 7e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||||| || || || ||||| ||||| | |||||| | |||| Sbjct 1181535 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCT 1181476 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| || | ||| || ||||| Sbjct 1181475 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCT 1181416 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | | | |||||||| ||||||| |||| ||| |||||| Sbjct 1181415 TGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 1181356 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || || || | ||||| ||||| || |||||| ||| Sbjct 1181355 TTCCCTGTCAGGGTTTTCACAAAGATCTGCATTGTGA 1181319 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||||| || || || ||||| ||||| | |||||| | | || Sbjct 1182816 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 1182757 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | ||||| ||||||||||| || | |||||| ||||| Sbjct 1182756 TCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 1182697 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | | | |||||||| ||||||| ||| | ||| |||||| Sbjct 1182696 TGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATGGTC 1182637 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 1182636 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||||| || || || ||||| ||||| | |||||| | | || Sbjct 1181763 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 1181704 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| || | ||| || ||||| Sbjct 1181703 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCT 1181644 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | | | |||||||| ||||||| ||||| ||| |||||| Sbjct 1181643 TGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGTGATGGTC 1181584 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 1181583 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 >seq7240 Length=45712 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||| || || || ||||| ||||| | || |||| | | || Sbjct 6215 AGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATCT 6156 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | |||||||||||| ||| | |||||||||||| Sbjct 6155 TCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 6096 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || || || || | | | || |||| ||||||| ||| | ||| |||||| Sbjct 6095 TGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTC 6036 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || || || || ||||| || |||||| Sbjct 6035 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 6003 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || || ||||| || ||||| ||||| | |||||| | | || Sbjct 6443 AGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 6384 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| |||| | ||||||||| || ||| | |||||| || || Sbjct 6383 TCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCC 6324 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| |||||| ||| | ||| |||||| Sbjct 6323 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTC 6264 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| || || || || || || ||||| Sbjct 6263 TTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||||| ||||| | |||||| | | || |||||||| || || Sbjct 7272 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTTCCA 7213 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||||||| ||| | |||||| ||||| || || || Sbjct 7212 GCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGAATTTTGGCCTTG 7153 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| ||||||| ||| | ||| ||||| || ||||| || ||| Sbjct 7152 ACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTT 7093 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 7092 TTCACAAAGATCTGCAT 7076 >seq6982 Length=3457922 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||||| ||||| | |||||| | || |||||||| || || Sbjct 878033 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACACCCATCTTCCAGCTGGTTTCCA 878092 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | | | |||||||||||| | ||| | |||||| || || || || || Sbjct 878093 GCACA--TCAATCTCTGCTGGTCTAGGGGAATGCCTTCTTTATCTTGAATTTTGGCCTTG 878150 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||||||| ||| ||| ||| | ||| ||||| || ||||| || ||| Sbjct 878151 ACATTCTCAATGGTATCACTGGGTTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTT 878210 Query 21159 TTGACAAATATTTG 21172 || ||||| || || Sbjct 878211 TTCACAAAGATCTG 878224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422074067579384