Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7240 134 1e-26 seq22597 122 9e-23 seq22615 114 1e-20 seq6982 91.5 2e-13 >seq7240 Length=45712 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || |||||||||||| | || || || ||| Sbjct 7076 ATGCAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 7135 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||||| |||||||| ||||| ||| | |||||| Sbjct 7136 GACACCATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGACCAG 7195 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || || |||||||| || | ||| ||||| ||||||||| Sbjct 7196 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 7255 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| || |||| || || | || ||||||||||||| || Sbjct 7256 ATCCAGAAAGAATCCACCCTTCACTTGGTCCTGCGCTTGAGGGGAGG 7302 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || | || ||||| ||||||||| | || || || ||| Sbjct 6003 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAAGTGGAGCCCAG 6062 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| ||||||| ||||| || ||||| ||| | ||||| Sbjct 6063 TGACACCATTGAGAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCA 6122 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || |||||||| || | ||| ||| | |||||||| Sbjct 6123 GCAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGAACCTTGTCTGACTACAA 6182 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| || |||| ||||| Sbjct 6183 CATCCAGAAAGAATCCACCCTGCA 6206 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || ||| Sbjct 6232 ATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTTGAAGTAGAGCCCAGT 6291 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | || ||||| ||||||||| | || ||| Sbjct 6292 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAG 6351 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || || || |||||||| || | |||||||| ||||||||| Sbjct 6352 CAGAGATTAATTTTTGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 6411 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| | || ||||| Sbjct 6412 ATCCAGAAGGAATCTACCCTGCA 6434 >seq22597 Length=1249212 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| | || || || ||| Sbjct 1181552 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 1181611 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| | ||||| | ||||||||||||||||| | |||||| Sbjct 1181612 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181671 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| |||||||| || | || ||||| ||||||||| Sbjct 1181672 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 1181731 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| || |||| || ||||| || |||| Sbjct 1181732 ATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCG 1181766 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| || || || || ||||||||| | || || || ||| Sbjct 1181323 AATGCAGATCTTTGTGAAAACCCTGACAGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 1181382 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| | ||||||||||||||||| | ||||| Sbjct 1181383 TGATACTATTGAGAATGTCAAAACCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCA 1181442 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| |||| || ||||| |||||||| Sbjct 1181443 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCTGACTACAA 1181502 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || |||| || ||||| || |||| Sbjct 1181503 CATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCG 1181538 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| | || || || ||| Sbjct 1182605 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAAGTGGAGCCCAGT 1182664 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| | ||||| | |||||||| |||||||| | |||||| Sbjct 1182665 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCTGACCAG 1182724 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | || ||||| ||||||||| Sbjct 1182725 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 1182784 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCT 40921 |||||||| || |||| || ||||| || |||| | || || ||| ||| Sbjct 1182785 ATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCGTCTCAGAGGTGGCTGCT 1182836 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||||||||||||| | || || || ||| Sbjct 1181780 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 1181839 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||||| | ||||||||||||||||| | |||||| Sbjct 1181840 GACACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181899 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACG 40846 || | ||||||| || ||||| |||||||| |||| Sbjct 1181900 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACG 1181936 >seq22615 Length=203576 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || |||||||||||| | || || || ||| Sbjct 192870 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 192929 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | || ||||| ||||||||| | || ||| Sbjct 192930 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAG 192989 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || || |||||||| || | ||| ||||| ||||||||| Sbjct 192990 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 193049 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| |||| ||||| Sbjct 193050 ATCCAGAAGGAATCCACCCTGCA 193072 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGAC 40785 |||||| | || || ||| ||| || | | | ||| |||||| ||| || | || Sbjct 192678 ATCACCCTTGAAGTAGAACCCAGTGATACCATTGAAAATGTCAAGGCAAAGATCCAGGAT 192737 Query 40786 AAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGAC 40845 ||||| ||||||||| | |||||||| || | || | || || || |||||||| || Sbjct 192738 AAAGAAGGCATCCCCCCAGACCAGCAGAGATTGATTTTTGCCGGAAAGCAGCTGGAAGAT 192797 Query 40846 GAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | |||||||| ||||||||||||||||| || | || || || |||| Sbjct 192798 GGTCGCACCCTGTCTGACTACAACATCCAGAAAGAATCAACTCTTCACTTAGT 192850 >seq6982 Length=3457922 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 || || || || ||||| | || || |||||||||||| | || || ||| ||| || Sbjct 878224 CAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGAACCCAGTGAT 878165 Query 40753 AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAA 40812 | | | | | |||||| ||||||| || ||||| ||||| ||| |||||||| Sbjct 878164 ACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCTAGACCAGCAG 878105 Query 40813 CGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 40872 || | || | || || || |||||||| || | | | ||||| |||||||||||| Sbjct 878104 AGATTGATGT--GCTGGAAACCAGCTGGAAGATGGGTGTACCCTGTCTGACTACAACATC 878047 Query 40873 CAGAAGGAGGCCACGCT 40889 ||||| || |||| || Sbjct 878046 CAGAAAGAATCCACCCT 878030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514987518806240