Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7675 145 5e-30 seq6894 105 5e-18 >seq7675 Length=222078 Score = 145 bits (160), Expect = 5e-30 Identities = 404/609 (66%), Gaps = 23/609 (4%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTAT-GCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTC 96956 || |||||||| |||||| || ||| || | ||| || |||| ||| | || | ||| Sbjct 43667 TAGACAGCCATCTCCATTTTAATAGCT-GGATGAGGATTGTAGTCTTCAATAAGGAAGTC 43609 Query 96957 ATTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGG 97016 | || || ||||||||||||| | ||| |||| || || || | |||||||| Sbjct 43608 CTCGGCCTTGAAATCATCAATAGTTTCAACTTTTCAAAGAATTTTGAGCTTAGGGAAAGG 43549 Query 97017 CCTGGGAGTTCGCGTAAGCTGCTCTGTGAG-AGCATCAATGTGATTCACATAAATGTGAG 97075 || || | || || ||| | | || ||| | ||| |||||| || || |||| Sbjct 43548 TCTTGGTTCTTGCTGAAACTGAATTTTCAGTAGCTT-AATACGATTCAGGTATATATGAG 43490 Query 97076 CATCTCCTA-AAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATA 97134 |||||| | || | || | |||||| || || || | |||| ||||| ||||| Sbjct 43489 TATCTCCCAGAATTATGTACAAATTCACCTGGCTTTAGGCCTTTGACTTGGGCCATCATG 43430 Query 97135 CAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGAT 97194 | || | || ||||| || |||||||| || ||| || || ||| ||| | ||| Sbjct 43429 TAGGTGAGCAGGGAATAACTGGCAATGTTGAACAGCATCCTGAGACCCTCATCTCCAGAT 43370 Query 97195 CTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGA 97254 ||||||||||||| ||| || ||||| |||| | ||| | |||| || | ||| Sbjct 43369 CTTTGATATAACTAACAAGAGAGCTTGCCATTTAATACAAAGAACTAACAGAGAGTGTGA 43310 Query 97255 CAGGGGGGCAACGCCATTTTTGGAA----CATCTAAGA-----CATTCCAAGCACACATC 97305 || | || | ||||| |||| | | || || |||| |||||||||| Sbjct 43309 CACAGAGGAAGTGCCATCAGAGGAAGATTCCTTTAGGATTTAGAATTCTAAGCACACATG 43250 Query 97306 AACATTCTTCTATC--GGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGAT 97363 | | ||||| ||| |||||| |||| || || | ||||| | | || ||||| Sbjct 43249 ATCCTTCTTTCATCAGGGTTGGTTTTG-----ATTGTGTCAATTAATTTTTGTAGTTGAT 43195 Query 97364 CAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTC 97422 | | | || | ||||| |||| || | ||| |||||||| |||||||| ||| Sbjct 43194 CTATTCTTTGCCTGGAATAATCTGTG-TTCATTTCTTTATATTCTGACCCAAAATGTCTC 43136 Query 97423 CATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTA 97482 | ||||| ||||| || || || | |||||||| || || | ||| || |||| Sbjct 43135 TACTGGAAGCCATACACTGGCCCCAAATCTCCTTCCTCCCTGGTAGTGAATCCCTGCTTG 43076 Query 97483 TCTAAATAG 97491 || ||| || Sbjct 43075 TCCAAAAAG 43067 >seq6894 Length=939852 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||||||| || ||||| | || | || ||||| || |||||||| || |||||||| Sbjct 59429 GTGACATGAGCAATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAACGGCACCCCG 59370 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || |||||||| | |||| ||||||||||||||| || |||| |||| | ||| Sbjct 59369 AGGCCCATATCTCCAGATCGTTGATATAACTGACAAGAGAGCTCGCCATTCAGTATATAG 59310 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCT 97284 ||||||| | | ||||| || ||||| ||||| |||| |||| Sbjct 59309 AACTGACAGAGAGCGTGACATGGAGGCAATGCCATCAGAGGAAGATCT 59262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346631958407180