Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq22501 120 6e-22 seq15175 93.3 8e-14 >seq22501 Length=2343730 Score = 120 bits (132), Expect = 6e-22 Identities = 109/134 (81%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||||||||| ||||||||||||||||| |||||||| | |||||||| Sbjct 1769244 GCATTTTTTGGAGCTCAGCTTAATTCTTTTATCCATGTGATTATGTATTCATATTATGGC 1769185 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||||||| ||| | ||||||||||| || | || | Sbjct 1769184 TTAACTGCATTTGG-CCCATGGATTCAGAAA-TATTTGTGGTGGAAACGATACTTGACCA 1769127 Query 52175 TAATGCAGTTGGTA 52188 || ||||||||||| Sbjct 1769126 TATTGCAGTTGGTA 1769113 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| | || | |||| ||||| | | || ||||| | || || |||||||| || Sbjct 1772558 GATAGCTGGGGCTCTGTGGTGGTACTTTGTGTCAAAAGGAGTTGAGTATTTGGATACAGT 1772499 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 || ||||| || ||||| ||| ||||| || ||| || || || |||||||| | Sbjct 1772498 GTTCTTCATTCTGAGGAAGAAAAACAATCAAGTATCTTTCCTTCATGTGTATCATCACTG 1772439 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTC-----AGGCA 52059 |||||||||||| | | ||||| || ||||| ||| | || ||||| | | ||| Sbjct 1772438 TACTATGTTTACATTGTGGTGGATTGGCATTAAGTGGGTAGCAGGAGGACAAGGTAAGCA 1772379 Query 52060 TTTTTTGGA 52068 | ||||||| Sbjct 1772378 TATTTTGGA 1772370 >seq15175 Length=350407 Score = 93.3 bits (102), Expect = 8e-14 Identities = 120/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 189467 ATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAG 189526 ||||||||||||| |||||||| |||||| | || | |||||||||||||| |||||| Sbjct 299217 ATGCAGATGGTGAAGGAAGGAAAGATGCATGGATTCCTCCGAATGTATTGGGCCAAGAAG 299158 Query 189527 ATACTTGAATGGACTAGAACACCTGAAGACG-CTTTGAGTTATAGTATCTATTTGAACAA 189585 || || || ||||| | ||||| || | | | ||||| | |||||| | || | Sbjct 299157 ATTCTGGAGTGGACCCACTCCCCTGAGGAAGCCCTAGAGTT-TGCCATCTATCTCAATGA 299099 Query 189586 CAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628 | | | ||||| |||| |||||| || || ||||||||| Sbjct 299098 CCGATTTCAGCTAGATGGCAGGGATCCCAATGGCTACGTAGGT 299056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922781661478960