Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq22615 107 2e-18 seq22561 105 8e-18 seq22336 102 9e-17 seq7240 102 9e-17 seq22770 100 3e-16 seq22337 100 3e-16 seq27089 98.7 1e-15 seq22597 98.7 1e-15 seq15216 98.7 1e-15 seq27188 91.5 2e-13 seq411 91.5 2e-13 >seq22615 Length=203576 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||||| |||| ||| ||||| || || ||||| |||| | Sbjct 193096 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 193037 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || |||||||| ||||| || || | || |||||| || | || Sbjct 193036 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 192977 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || ||| ||| ||| |||| || | | ||||| || | ||||| Sbjct 192976 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 192917 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 192916 TCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 >seq22561 Length=2567171 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||| |||||||||||||||| |||||||||||| Sbjct 2546888 TCTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACT 2546829 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2546828 ATACTAACGAGGA 2546816 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 2555506 CTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 2555447 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2555446 TACTAACGAGGA 2555435 >seq22336 Length=2089399 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2058473 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2058414 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 2058413 TACTAACGAGGAATGA 2058398 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| || |||||||||||||||||| ||||| ||||| Sbjct 2072366 TTCTCCCCGTCGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTGACCAC 2072307 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 2072306 TATACTAACGAGGA 2072293 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| || |||||||||||||||||| ||||| ||||||| Sbjct 2076526 CTCCCCGTCGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2076467 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 2076466 TACTAACGAGGAGTG 2076452 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |||| Sbjct 2087929 GGGAATCGAACCCTGACATCCCGCGTGACAGGCGGGGATACTGACCACTATACTAACGAG 2087870 Query 60136 GATTG 60140 || || Sbjct 2087869 GAGTG 2087865 >seq7240 Length=45712 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || |||| ||||| || | ||| || || || || ||||| |||| | Sbjct 7302 CCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 7243 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || |||||||| ||||| || || | || ||||||||| | || Sbjct 7242 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 7183 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || ||||| ||| |||| | |||| || | | ||||| || | ||||| Sbjct 7182 ATGCCTTCTTTGTCT-TGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 7124 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || | || || |||||||| ||||| Sbjct 7123 TTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 >seq22770 Length=106231 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 104113 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 104054 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 104053 ATACTAACGAGGA 104041 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 54096 TTTCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 54037 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 54036 ACTATACTAACGAGGA 54021 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| || |||||||||||||||||| ||||| ||||||| Sbjct 17946 CTCCCCGTCGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTGACCACTA 17887 Query 60126 TACTACCGAGGATTGA 60141 ||||| ||||||| || Sbjct 17886 TACTAACGAGGATGGA 17871 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| || |||||||||||||||||| ||||| |||||| Sbjct 2049 TCTCCCCGTCGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTGACCACT 1990 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1989 ATACTAACGAGGA 1977 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| || |||||||||||||||||| ||||| |||||| Sbjct 8893 TCTCCCCGTCGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTGACCACT 8834 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 8833 ATACTAACGAGGA 8821 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| || |||||||||||||||||| ||||| ||||||| Sbjct 25119 CTCCCCGTCGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTGACCACTA 25060 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 25059 TACTAACGAGGA 25048 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| || |||||||||||||||||| ||||| ||||||| Sbjct 44746 CTCCCCGTCGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTGACCACTA 44687 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 44686 TACTAACGAGGA 44675 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| || |||||||||||||||||| ||||| |||||||||||| |||| Sbjct 34048 GGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTAACGAG 33989 Query 60136 GA 60137 || Sbjct 33988 GA 33987 >seq22337 Length=2413889 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 10971 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 10912 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 10911 ATACTAACGAGGA 10899 >seq27089 Length=5919 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4115 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4174 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4175 TACTAACGAGGA 4186 >seq22597 Length=1249212 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43027 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCT 43086 |||| || |||||||| || || || ||||| | ||||||||| | || | || ||| | Sbjct 1181936 CGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTT 1181877 Query 43087 TGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| |||||| ||||| || | | ||||| || | ||||| || | |||| Sbjct 1181876 TGTCTTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGA 1181817 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||||| || || ||||| |||||||| ||||| Sbjct 1181816 TGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq15216 Length=4286460 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2068373 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2068432 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2068433 TACTAACGAGGA 2068444 >seq27188 Length=1535227 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 672443 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 672384 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 672383 ATACTAACGAGGA 672371 >seq411 Length=419930 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 308993 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 308934 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 308933 ATACTAACGAGGA 308921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571560467920720