Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq22597 122 6e-23 seq7240 93.3 3e-14 >seq22597 Length=1249212 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| ||||| || | || ||||||||| ||||||||||| ||||| ||| |||| Sbjct 1181536 CAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTC 1181477 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || ||||||| ||||||||| || | || ||| ||||| Sbjct 1181476 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTC 1181417 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| | ||| | || | || | ||| | | || || |||| ||||||| Sbjct 1181416 TTGGAT-TTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTGATGG 1181358 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || || || |||||||||||||||||||| Sbjct 1181357 TCTTCCCTGTCAGGGTTTTCACAAAGATCTGCAT 1181324 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| ||||| || | || ||||||||| ||||||||||| ||||| ||| | || Sbjct 1181764 CAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 1181705 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || ||||||| ||||||||| || | || ||| ||||| Sbjct 1181704 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTC 1181645 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | || | ||| | | || || |||| ||||||| Sbjct 1181644 TTGGAT-TTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGTGATGG 1181586 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||||| || || || ||||||||||||||||| Sbjct 1181585 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| ||||| || | || ||||||||| ||||||||||| ||||| ||| | || Sbjct 1182817 CAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 1182758 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || || |||| ||||||||| || | || || ||||| Sbjct 1182757 TTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTC 1182698 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | || | ||| | | || || || | ||||||| Sbjct 1182697 TTGGAT-TTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATGG 1182639 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||||| || || || ||||||||||||||||| Sbjct 1182638 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 34233 CGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCT 34292 |||| |||| |||||||||||| || ||||||| ||||||||| || | || ||| | Sbjct 1181936 CGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTT 1181877 Query 34293 TGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 |||| || ||| ||||| | || | || | || | | || || |||| ||| Sbjct 1181876 TGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 1181818 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || || ||||||||||||||||| Sbjct 1181817 ATGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq7240 Length=45712 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||| ||| | || ||||||||| ||||||||||| ||||| ||| | || Sbjct 7288 CAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 7229 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || || || || | | ||||||||| ||| | || || ||||| Sbjct 7228 TTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 7169 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || || ||| | || | || | || | | || || || | |||||||| Sbjct 7168 TTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGT 7109 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| ||||| | ||||||||||||||||||||| Sbjct 7108 TTTACCGGTCAAGGTTTTCACAAAGATCTGCATC 7075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322930354533440