Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq22597 122 6e-23
seq7240 93.3 3e-14
>seq22597
Length=1249212
Score = 122 bits (134), Expect = 6e-23
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| ||||| || | || ||||||||| ||||||||||| ||||| ||| ||||
Sbjct 1181536 CAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTC 1181477
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| |||||||||||| || ||||||| ||||||||| || | || ||| |||||
Sbjct 1181476 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTC 1181417
Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355
|| ||| | ||| | || | || | ||| | | || || |||| |||||||
Sbjct 1181416 TTGGAT-TTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTGATGG 1181358
Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || || || || ||||||||||||||||||||
Sbjct 1181357 TCTTCCCTGTCAGGGTTTTCACAAAGATCTGCAT 1181324
Score = 122 bits (134), Expect = 6e-23
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| ||||| || | || ||||||||| ||||||||||| ||||| ||| | ||
Sbjct 1181764 CAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 1181705
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| |||||||||||| || ||||||| ||||||||| || | || ||| |||||
Sbjct 1181704 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTC 1181645
Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355
|| ||| ||||| | || | || | ||| | | || || |||| |||||||
Sbjct 1181644 TTGGAT-TTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGTGATGG 1181586
Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| ||||| || || || |||||||||||||||||
Sbjct 1181585 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552
Score = 109 bits (120), Expect = 4e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| ||||| || | || ||||||||| ||||||||||| ||||| ||| | ||
Sbjct 1182817 CAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 1182758
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| |||||||||||| || || |||| ||||||||| || | || || |||||
Sbjct 1182757 TTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTC 1182698
Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355
|| ||| ||||| | || | || | ||| | | || || || | |||||||
Sbjct 1182697 TTGGAT-TTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATGG 1182639
Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| ||||| || || || |||||||||||||||||
Sbjct 1182638 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605
Score = 93.3 bits (102), Expect = 3e-14
Identities = 117/158 (74%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 34233 CGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCT 34292
|||| |||| |||||||||||| || ||||||| ||||||||| || | || ||| |
Sbjct 1181936 CGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTT 1181877
Query 34293 TGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351
|||| || ||| ||||| | || | || | || | | || || |||| |||
Sbjct 1181876 TGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 1181818
Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||||||||| || || || |||||||||||||||||
Sbjct 1181817 ATGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780
>seq7240
Length=45712
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| |||| ||| | || ||||||||| ||||||||||| ||||| ||| | ||
Sbjct 7288 CAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 7229
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| |||||| || || || || | | ||||||||| ||| | || || |||||
Sbjct 7228 TTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 7169
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
|| || ||| | || | || | || | | || || || | ||||||||
Sbjct 7168 TTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGT 7109
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
||| ||||| | |||||||||||||||||||||
Sbjct 7108 TTTACCGGTCAAGGTTTTCACAAAGATCTGCATC 7075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322930354533440
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