Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq571 107 2e-18 seq6963 95.1 1e-14 >seq571 Length=175726 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| |||| | || ||||| | |||||||| |||||||| || ||||||| Sbjct 172704 TTGACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTC 172645 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTG 16028 |||| ||||| ||||| |||||||||||||| ||||||| || Sbjct 172644 CTTCCAATGAGATATTCTCCATAAAATCAAATGGATTTTCTG 172603 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| |||| || || ||||| || | || ||||||| |||||||| || Sbjct 169062 TCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 169003 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || |||||||| || ||||| || Sbjct 169002 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 168943 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 168942 ACAACACGTTCACC 168929 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| || ||||||||| || || |||| |||||||||||| ||||| || | Sbjct 166164 TTTCTTTGGAGTCCTTAATATAAGTGTCAATAAGTAGACTATACATTTCAGAATGTATGT 166105 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || || || ||||| || || | ||||| | ||| |||||||| Sbjct 166104 TTTCCATAGCAATTTGGAAGCCATAGAAACAACGGGCTTCAGTTATCTGTACTTC 166050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 16054 TTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCAT 16113 |||||||| | ||| || || |||||||| |||||||||||||||||| || ||||| Sbjct 172483 TTCCAACATGAGTCTGTCTGCTACAAATTCAATATACTGTTTCATTAAAGTGCAATTCAT 172424 Query 16114 TCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 ||| || ||||| ||||| | ||||| || || || Sbjct 172423 TCCAATCAATTTTACAGGCAAAGCTTCAGTCAAGAA 172388 >seq6963 Length=4024090 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||| | | || ||||| ||| || | | || |||||||| | Sbjct 2862542 TTAAAAATCTGCATCCAAGGTGAAGACATTGTCTGTTGTTTCTGCCATAACTGCAAAACG 2862601 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 |||||||| || || |||||||| ||||||||||| ||||| | ||||||||||| Sbjct 2862602 CTGATATTCTGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATATTTTC 2862661 Query 16006 CATAAAATCAAAAGGATTTTTTGAA 16030 ||| |||||||| ||||| | |||| Sbjct 2862662 CATGAAATCAAAGGGATTATCTGAA 2862686 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || ||||| || || || ||||| || |||| || ||| Sbjct 2874078 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 2874137 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| || ||||| || ||||| || || || || || Sbjct 2874138 AGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAGCG 2874197 Query 16379 ACCAATC 16385 |||| || Sbjct 2874198 ACCACTC 2874204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462304019916400