Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq72 652 0.0 seq7096 86.0 4e-12 >seq72 Length=2384219 Score = 652 bits (722), Expect = 0.0 Identities = 834/1145 (73%), Gaps = 12/1145 (1%) Strand=Plus/Plus Query 107498 CCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGA 107557 |||||| ||||| | |||| ||||||||||| ||| |||||| ||||| ||| || Sbjct 887808 CCTGAAATTGCCACCCAAGAACTCCATCAACTGCTCTCTGATCACCAGAGGGAACCCTGA 887867 Query 107558 AGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCAC 107617 || ||| |||| | | ||| |||| | ||| || || |||||| | Sbjct 887868 GGCTTTGGCGGAGGCAGCCTTGTCCAAGTTGGAGATCAAGTTAAGAAGGCAGCCTCTGAA 887927 Query 107618 TGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTT 107677 || || |||| |||||| | || | ||||||| | ||||| | || || ||| Sbjct 887928 TGAAACTCATTATCTCAACTTGACTCGTGACTGTGCTCACTTCAGGACCAGTCAGAGGTT 887987 Query 107678 CATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGT 107737 ||| || ||| |||| || || ||| |||||||||||||| || || |||||| | Sbjct 887988 CATTCAAACCCCCTTGAGCAAGGAGGAGGCCGACTTCCCCATTGCATATTCCATGGTGAT 888047 Query 107738 CCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACAT 107797 ||||| ||||||||||||||||| |||| ||| |||| ||||||||||| |||||||| Sbjct 888048 TCATGAAAAGATTGAAAACTTTGAGAGGCTCCTGAGAGCTGTGTATGCCCCACAGAACAT 888107 Query 107798 ATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCAT 107857 ||||| ||||||||||| |||||| ||||| | ||| | ||||| |||| ||||| Sbjct 888108 CTACTGCATCCACGTGGATAAGAAGTCTCCAGAAGCCTTCCAGGAGGCAGTCAGAGCCAT 888167 Query 107858 TATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTC 107917 || ||| || ||| | |||||||| |||||| || |||||| ||||| ||||| || Sbjct 888168 TAGTTCATGTTTCTCAAATGTCTTTGTGGCCAAAAATCTGGTCCAAGTGGTGTATGCTTC 888227 Query 107918 CTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCC 107977 |||||||||||| ||||| || |||||||| ||||| || ||||||||||| || ||||| Sbjct 888228 CTGGTCCAGAGTACAAGCAGATCTGAACTGCATGGAGGAATTGCTCCAGAGTTCTGTGCC 888287 Query 107978 ATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGAT 108037 ||||| ||| | ||||||| || ||||| || |||||||||||||||||||| ||||| Sbjct 888288 CTGGAAATACCTTTTGAATACCTGTGGGACTGATTTCCCCATAAAGACCAATGCTGAGAT 888347 Query 108038 GGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGA 108097 ||| | | ||||| ||||||| || ||||| | |||||| || || |||| ||| Sbjct 888348 GGTGAAGTCTCTCAAACTGTTGAACGGGAAGAATAATATGGAATCAGAAATACCCTCTCC 888407 Query 108098 GTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGA-----CAGACACACTGTACCCT 108152 | ||||| || |||||||| || | ||||||||| | ||| | || | || Sbjct 888408 CTTCAAAATAAGACGCTGGAAGTATCACTATGAGGTCAAGAATAAGATATACAGGACTGA 888467 Query 108153 ACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTAT 108212 | ||| | | |||| ||| |||| || || || ||||||||||||||||||||| Sbjct 888468 AACAG--AAAAGAAGCCCCCGCCCC---ATGGCTTGCCTATGTTCACAGGGAATGCCTAT 888522 Query 108213 TTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTG 108272 ||||||| || |||| |||||| ||||| |||| | | ||| | | |||| | Sbjct 888523 ATTGTGGCTTCCCGAGACTTTGTTCAACACCTCTTTAAAAGCCCAGATGCTCAAAAGTTC 888582 Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332 | |||||||| || |||||||||||||| || ||||| |||||||| || || || | Sbjct 888583 ATAGAATGGGTGAAGGACACCTATAGCCCTGATGAACATCTCTGGGCTACTCTGCATAGG 888642 Query 108333 GCTCCGTGGATGCCTGGCTCTG-TTCCTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 || |||||||||||||||| |||||| ||| ||||| || ||||| ||| ||| Sbjct 888643 ATGCCCTGGATGCCTGGCTCTGTTTCCTA-CCATGAAAAGTACCATATCTCTGACCTGAA 888701 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 |||||| ||| || | || |||||||| | ||| || ||| ||||| |||| || Sbjct 888702 TGCCATTGCCCGGTTTGTGAAGTGGCAAGGCATCGATGGTGATATCAGCCAGGGGCATCC 888761 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 ||| | | |||| | |||||| | | | | | | || | || ||||| || ||| | Sbjct 888762 CTATCCCCTCTGCACCGGAATCTACCAGCGAGGTGTTTGTGTGTATGGGGCTGGAGACTT 888821 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 | | | || ||||| | || || || |||| |||||||||||||||| ||| ||||| Sbjct 888822 GCATTTTATGCTCCAAAGTCACCATCTGCTGGCCAACAAGTTTGACCCGAAGGTAGATGA 888881 Query 108572 TAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACT 108631 || | || |||||| | ||||| || || || | || ||||| ||||||| || || Sbjct 888882 CAATGCACTCCAGTGCCTGGAAGAATATCTGCGGTACAAAGCCATTTATGGGAAGGACCT 888941 Query 108632 TTGAG 108636 |||| Sbjct 888942 CTGAG 888946 >seq7096 Length=4092164 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/198 (69%), Gaps = 13/198 (7%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 ||| ||||||| || || | |||||||||||| | || |||||| | ||||| ||| Sbjct 3516947 CCAATGAGTAAGGAGAAGGAGGTCTTCCCCATTGCATTTTCAATGGTGATTCATGAAAAG 3516888 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 |||||||| || || |||| ||| | || |||||||| ||||||| ||| | | Sbjct 3516887 ATTGAAAATTTAGAGAGGCTTCTGAAGGTTGTATATGCCCCATAGAACATCTACAGCACC 3516828 Query 107808 ----CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 ||| || || | || ||||| ||||||||||||| | ||| ||| Sbjct 3516827 CACTCACATGTATAAAAGGTATCCAGAAACTTTCAAAGAGGTAG---------TTAGTTC 3516777 Query 107864 CTGCTTCCCCAATGTCTT 107881 || ||||| |||||||| Sbjct 3516776 ATGTTTCCCAAATGTCTT 3516759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348116107421676